FC930760

Overview
NameFC930760
Unique NameFC930760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15119 contig Ccv1_Contig15119:26..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPR4_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 6.534e-62
Identity = 126/187 (67.38%), Postives = 143/187 (76.47%), Query Frame = 3
Query:   48 MEVATASAPIFG-LRTRMLATPP------RTSPR---TVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            MEVA A+A  F  LR R  A  P      R+ PR   + +   +LS  F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLASYL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK  EKLGY+TEAFAIYDVMGYVKPPIFTLCV
Sbjct:    1 MEVAAATATSFTTLRARTSAIIPSSTRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTLCV 187          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPR_SYNE7 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.684e-23
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 3
Query:  291 PFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDAEKPIYLYINSTGTTKGV-EKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            P+    ++  PPPDL S L K RI+YLGM    S          VTELI+A+ LYL++++ EKPIY YINSTGT+    + +GYETEAFAI D M Y+KPP+ T+C+
Sbjct:   11 PYYGDVSYRTPPPDLPSLLLKERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGDAIGYETEAFAICDTMRYIKPPVHTICI 117          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPR_SYNY3 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803) GN=clpR PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.739e-22
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 3
Query:  309 AWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDAEKPIYLYINSTGTTKGV-EKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            A++ PPPDL S L K RIVYLGM    S          VT+LI+A+ LYLQ++D +KPIY YINSTGT+    + +G+ETEAFAI D + Y+KPP+ T+C+
Sbjct:   15 AFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIYFYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICI 115          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPR3_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.596e-21
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 3
Query:  321 PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTK-GVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            PPPDL S L   RIVY+GM  VP+VTEL++AE +YLQ+ D ++PIY+YINSTGTT+   E +G E+E FAIYD +  +K  + T+CV
Sbjct:  118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCV 204          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 45/84 (53.57%), Postives = 61/84 (72.62%), Query Frame = 3
Query:  324 PPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGT-TKGVEKLGYETEAFAIYDVMGYVKPPIFTL 572
            PPDL S L   RI YLGM  VP+VTEL++A+F++L Y++  KPIYLYINS GT  + +E +G ETEA+AI D + Y K  ++T+
Sbjct:  169 PPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYTI 252          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP2_GLOVI (ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 44/95 (46.32%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  294 FTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            ++    +  PPPDL S L   RIVYLG      V EL++A+ LYL+ ED  KPI +YINS G        G+ET AFA+YD M +V+ PI T+C+
Sbjct:   16 YSGDYGFRTPPPDLPSLLLNERIVYLGTPINDVVAELLIAQLLYLESEDNAKPIEIYINSPGVA------GFETSAFAVYDTMRHVRMPIKTICL 104          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_THEPX (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G  T  FAIYD M Y+KP + TLCV
Sbjct:   19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GSITAGFAIYDTMQYIKPDVVTLCV 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_THEP3 (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=clpP PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G  T  FAIYD M Y+KP + TLCV
Sbjct:   19 DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GSITAGFAIYDTMQYIKPDVVTLCV 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_PELCD (ATP-dependent Clp protease proteolytic subunit OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RI++LG +    V  LI+A+ L+L+ ED EK I+LYINS G        G  T   AIYD M YV+ P+ TLCV
Sbjct:   19 DIFSRLLKDRIIFLGGAVDDQVANLIIAQMLFLESEDPEKEIFLYINSPG--------GVVTAGMAIYDTMQYVRCPVSTLCV 93          
BLAST of FC930760 vs. ExPASy Swiss-Prot
Match: CLPP_GEOUR (ATP-dependent Clp protease proteolytic subunit OS=Geobacter uraniireducens (strain Rf4) GN=clpP PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 3
Query:  330 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGVEKLGYETEAFAIYDVMGYVKPPIFTLCV 578
            D+ S L K+RIV+LG +   +++ L++A+ L+L+ ED +K I+LYINS G        G  T   AIYD M Y+K P+ T+CV
Sbjct:   18 DIYSRLLKDRIVFLGGAIDDAISNLVIAQLLFLEAEDPDKDIHLYINSPG--------GVVTAGMAIYDTMRYIKAPVSTICV 92          
The following BLAST results are available for this feature:
BLAST of FC930760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CLPR4_ARATH6.534e-6267.38ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR_SYNE72.684e-2350.47Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR_SYNY31.739e-2252.48Putative ATP-dependent Clp protease proteolytic su... [more]
CLPR3_ARATH5.596e-2156.32ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPR1_ARATH1.990e-1853.57ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP2_GLOVI1.092e-1646.32ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THEPX1.632e-1245.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP31.632e-1245.78ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELCD3.635e-1246.99ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOUR3.635e-1243.37ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108G04EF PostHarvP1 Citrus clementina cDNA clone C34108G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930760 ID=FC930760; Name=FC930760; organism=Citrus clementina; type=EST; length=629bp
GAATCGTCAGCCTTTTCACTCTTGCTCTCTAACAACTCCGCTACCAAATG
GAAGTCGCCACCGCATCAGCGCCGATCTTCGGGCTCCGCACGCGCATGTT
AGCAACACCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACC
TATCCACCAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGAC
TTCTCCGGGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTG
CAAGTCCAAGCCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTA
GTGGAACTGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTAC
AAGAATCGAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGA
GCTGATTCTTGCTGAGTTCCTTTACCTGCAGTATGAAGATGCTGAGAAGC
CCATTTACTTATACATAAACTCTACGGGAACAACCAAGGGTGTCGAGAAG
TTGGGTTATGAAACTGAGGCTTTTGCGATATATGATGTTATGGGTTATGT
CAAGCCGCCTATATTTACTCTTTGTGTCGGCAATGCTTGGGGTGAGGCAG
CGCTTCTCTTGGGTGCCGGTGCCAAAGGA
back to top