FC930773

Overview
NameFC930773
Unique NameFC930773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930773 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.771e-28
Identity = 71/153 (46.41%), Postives = 96/153 (62.75%), Query Frame = 3
Query:  180 VAQNDAGSAAGLDLSGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLVSK 638
            VA  D G+A        E   N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST++ +ASP AQ +P+Q    C+  A+LP+ARRHSLQRF EKRRDRLV+K
Sbjct:   18 VADGDGGAAEIGGTGSVEKSINEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSSTSN-VASPAAQPFPIQPISFCRSTADLPIARRHSLQRFLEKRRDRLVNK 160          
BLAST of FC930773 vs. ExPASy Swiss-Prot
Match: TIF3A_ARATH (Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.776e-12
Identity = 50/113 (44.25%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  294 LAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKKDDTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAELPMARRHSLQRFFEKRRDRLV 632
            + P+QLTI +GG   VFD IPA+KV+EI+ IAA +A  T T        N  + +P L R+ S  S AS +A              C   A++P+ARR SLQRFFEKRR R V
Sbjct:  127 ILPSQLTIIFGGSFSVFDGIPAEKVQEILHIAA-AAKATET-------INLTSINPALKRAISF-SNASTVA--------------CVSTADVPIARRRSLQRFFEKRRHRFV 216          
The following BLAST results are available for this feature:
BLAST of FC930773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TIF3B_ARATH8.771e-2846.41Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
TIF3A_ARATH1.776e-1244.25Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34108H06EF PostHarvP1 Citrus clementina cDNA clone C34108H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930773 ID=FC930773; Name=FC930773; organism=Citrus clementina; type=EST; length=763bp
AAGCAAAGGCGAGGAAGCTGCGAGAGAAAATTAAAAAAAATTGAAAAAAA
TCGAAGAAGAAGAGGAAGGAGTCTGGAAATTTCTCGAGTTTAATTCAAAT
GGAGGAATTTGGGACTGTTGATGAAGTGAAGCCGAAGGCTGAGGCCGGAA
TGGAAGTAGACGATAAGAAGAAGCATGAGGTTGCGCAAAACGACGCCGGA
TCTGCTGCAGGGCTTGATTTGTCGGGGAACGAGGTGTTTAACAACACCAT
CAGGGCCACGGCAATCCCAACTTCTGGAGTGAATGCCACGGACCTTGCTC
CAACTCAGCTTACGATCTTCTATGGTGGAAAAGTGTGTGTATTTGATGCC
ATTCCGGCAGACAAGGTTCGTGAAATTATGCTTATTGCTGCCTCTTCTGC
CACTGTTACTAACACAAGTGACATGAAGAAGGACGATACCAACTGTCCTG
CCTCTTCACCAGTTCTAACAAGGTCTCCTTCACTGCAAAGCACTGCAAGT
GCTTTGGCATCACCTCGGGCACAATCATATCCTGTTCAAAGGAATCTCCT
CTGCAAATTGCAAGCTGAACTACCAATGGCAAGGAGGCATTCCCTTCAGC
GATTTTTCGAGAAGCGACGTGACAGGCTGGTGAGCAAGATCCATATCCTG
TTCATCAGAGGCAAAGCTTCTGACACCAAGCTCAGACTCTGCAGAGCAGG
TGCTTGAGAAACTTCGTGCCTCAGAGAATGCACCTAGGCTGCAGCATGTG
CATAATATCTATC
back to top