FC930789

Overview
NameFC930789
Unique NameFC930789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.805e-69
Identity = 124/198 (62.63%), Postives = 153/198 (77.27%), Query Frame = 1
Query:  103 RQNRWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            +  RWSL+  T LVTGGTKG+G A+VEE +  GA +HTC+R E ELNEC+   Q KG +VTGSVCD S RP+R+ L+ TVSS+F GKL+I +NN+G    KPTL+Y AEDFS  +STN ESA+HL QLAHPLL+ASG  +I+ MSS  G+VSA+VG++YSATKGA+NQLA+NLACEWA D IR N+VAP  I TP  E
Sbjct:    6 QSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAE 203          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.661e-67
Identity = 117/195 (60.00%), Postives = 158/195 (81.03%), Query Frame = 1
Query:  112 RWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            RWSL+GMTALVTGGT+G+G A+VEEL+  GA V+TCSR++ +L+EC+   + KG KV+G VCDVSS  QRQTL+ +V+S FNGKLNI +NN GT++ K    + AED+S++M TNFE++++LCQLAHPLL+ASG ASIV  SSA G+++  + ++Y+A+KGA+NQ+ K+LACEWAKD+IR N+VAPW I TP  E
Sbjct:   12 RWSLRGMTALVTGGTRGIGYAIVEELANFGAEVYTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQRQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYNLCQLAHPLLKASGNASIVFNSSAAGVIAVPLSSIYAASKGAINQVTKSLACEWAKDSIRVNAVAPWIINTPIIE 206          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.403e-58
Identity = 107/199 (53.77%), Postives = 148/199 (74.37%), Query Frame = 1
Query:  100 SRQNRWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            + + RWSL+G TALVTGG+KG+G A+VEEL+ LGA V+TCSR E EL+EC+   + KGL V GSVCD+ SR +R  L+ TV+ +F+GKLNI VNN G  + K   ++  +D++++M TNFE+A+HL Q+A+PLL+AS   +++ +SS  G  +    ++YSA+KGA+NQ+ K+LACEWAKDNIR NSVAP  I TP  E
Sbjct:   12 NNEGRWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVE 210          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.533e-57
Identity = 107/195 (54.87%), Postives = 140/195 (71.79%), Query Frame = 1
Query:  112 RWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            RW+L+G TALVTGG++G+G  +VEEL+ LGA+V+TCSR + ELN+C+   + KG KV  SVCD+SSR +RQ L+NTV++ F+GKLNI VNN G  + K   +Y  ED+SL+MS NFE+A+HL  LAHP L+AS   ++V +SS  G ++     VY ATKGAM+QL + LA EWAKDNIR N V P  I T   E
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVE 198          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.782e-53
Identity = 103/195 (52.82%), Postives = 135/195 (69.23%), Query Frame = 1
Query:  112 RWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            RW+L+G TALVTGG++G+G  +VEEL+ LGA+V+TCSR + EL+EC+   + KG  V  SVCD+SSR +R+  + TVS+ F+GKLNI VNN G  + K   +Y  ED+S +MS NFE+A+HL  LAHP L+AS   ++V +SS  G  +     VY ATKGAM+QL + LA EWAKDNIR N V P  I T   E
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSISGASALPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSMVE 198          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.166e-20
Identity = 68/199 (34.17%), Postives = 101/199 (50.75%), Query Frame = 1
Query:  100 SRQNRWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTL-EYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFT 693
            +RQN   L    ALVT  T G+GLA+   L+  GA V   SR +  ++  +  LQ +GL VTG VC V     R+ L+N    L  G ++I V+N   +     L +   E ++ V+S N  ++  + +   P +   G  S+V++SS  G V       Y+ +K A+  L KN A E A  NIR N +AP  I+T F+
Sbjct:    7 TRQN--PLANKVALVTASTDGIGLAIARRLAEDGAHVVISSRKQQNVDRAVATLQGEGLSVTGVVCHVGKAEDREKLVNMALKLHQG-IDILVSNAAVNPFFGNLMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVLFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTHFS 202          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: GNO_GLUOX (Gluconate 5-dehydrogenase OS=Gluconobacter oxydans GN=gno PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.871e-20
Identity = 61/201 (30.35%), Postives = 103/201 (51.24%), Query Frame = 1
Query:  100 SRQNRWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFN--GKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            S  + +SL G  ALVTG ++G+GL + + L+  GA V    R    L+      + +GLK + +V DV+ +     +I+ V+++    G ++I +NN G     P  E++ +D+  +MSTN  + F + Q     +   G   IV + S    ++      Y+ATKGA+  L K +A +W +  ++ N +AP Y  T  TE
Sbjct:    2 SHPDLFSLSGARALVTGASRGIGLTLAKGLARYGAEVVLNGRNAESLDSAQSGFEAEGLKASTAVFDVTDQ---DAVIDGVAAIERDMGPIDILINNAGIQRRAPLEEFSRKDWDDLMSTNVNAVFFVGQAVARHMIPRGRGKIVNICSVQSELARPGIAPYTATKGAVKNLTKGMATDWGRHGLQINGLAPGYFATEMTE 199          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: Y2049_STAEQ (Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 54/187 (28.88%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  136 ALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            A+VTG + G+G A+ ++LS  GA++    R E  LNE    L      V+    DV+ +     ++  V   F G ++I VN+ G S+     +YN E +  ++  N +   H+ Q   P L    +  I+ ++S  G        VY ATK A++ + ++L  E A+  ++  S++P  + TP TE
Sbjct:    9 AVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVSA---DVTVKSNIDDMLKAVIDHF-GHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTE 191          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: Y2036_STAES (Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 54/187 (28.88%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  136 ALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            A+VTG + G+G A+ ++LS  GA++    R E  LNE    L      V+    DV+ +     ++  V   F G ++I VN+ G S+     +YN E +  ++  N +   H+ Q   P L    +  I+ ++S  G        VY ATK A++ + ++L  E A+  ++  S++P  + TP TE
Sbjct:    9 AVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVSA---DVTVKSNIDDMLKAVIDHF-GHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTLHVLQATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSISPGMVDTPMTE 191          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 62/192 (32.29%), Postives = 97/192 (50.52%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTL-EYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFT 693
            L    ALVT  T G+G A+   L+  GA V   SR +  ++  +  L+ +GL VTG+VC V     R+ L+ T   L +G ++I ++N   S    +L +   E +  ++  N ++   L +   P +   G  SIV++SS            Y+ +K A+  L KNLA E A+ N+R N +AP  IRT F+
Sbjct:   12 LDNKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVATAVKL-HGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELAESNVRVNCLAPGLIRTSFS 202          
The following BLAST results are available for this feature:
BLAST of FC930789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
TRNH1_ARATH8.805e-6962.63Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRNH_DATST1.661e-6760.00Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN1_DATST2.403e-5853.77Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRN2_DATST4.533e-5754.87Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN2_HYONI1.782e-5352.82Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
DHRS4_RAT1.166e-2034.17Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
GNO_GLUOX9.871e-2030.35Gluconate 5-dehydrogenase OS=Gluconobacter oxydans... [more]
Y2049_STAEQ2.872e-1928.88Uncharacterized oxidoreductase SERP2049 OS=Staphyl... [more]
Y2036_STAES2.872e-1928.88Uncharacterized oxidoreductase SE_2036 OS=Staphylo... [more]
DHRS4_BOVIN6.398e-1932.29Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]

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Properties
Property NameValue
Genbank descriptionC34109A10EF PostHarvP1 Citrus clementina cDNA clone C34109A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930789 ID=FC930789; Name=FC930789; organism=Citrus clementina; type=EST; length=696bp
GAAGCAAACTAAGGCAATATAATAGCGGCCAGCAATACTAGAAGAGGAAG
AGACAGAGCAGAGATCAGAATGGCTCAGCCTCAGCAGACAGAGAGCCATA
GCAGGCAAAACAGATGGAGTCTTCAGGGCATGACAGCTCTTGTTACTGGC
GGCACCAAAGGACTCGGGCTTGCTGTTGTAGAGGAACTGTCAATGCTAGG
CGCCACTGTGCATACATGCTCCAGGACTGAAACAGAGCTTAATGAATGTA
TACATCACCTGCAGATGAAAGGTTTGAAAGTCACCGGTTCAGTCTGTGAT
GTATCGTCTCGACCTCAAAGACAGACGCTAATCAACACAGTCTCCTCTCT
GTTTAATGGCAAACTTAACATCTTTGTAAACAATGTTGGAACAAGTGTAC
TAAAGCCAACTCTCGAGTACAATGCTGAAGATTTTTCATTAGTAATGTCT
ACAAATTTCGAGTCTGCCTTCCACTTATGTCAACTTGCACATCCTCTGTT
GAGAGCTTCTGGGGCAGCAAGCATTGTTCTCATGTCTTCAGCACTAGGCA
TTGTATCAGCAAACGTTGGAACCGTCTATTCAGCTACTAAAGGAGCAATG
AATCAACTTGCAAAAAATTTGGCATGTGAGTGGGCAAAAGACAACATAAG
GACCAATTCTGTCGCTCCTTGGTACATCAGAACTCCCTTTACTGAA
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