FC930791

Overview
NameFC930791
Unique NameFC930791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5981 contig Ccv1_Contig5981:115..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930791 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.946e-55
Identity = 83/180 (46.11%), Postives = 123/180 (68.33%), Query Frame = 3
Query:  183 VGDLKENFIELKEAKARPLSLDDDIAIRVNPFLHKLVNDYGKNSFMWFGPTPRVNIMNPDQIKAIFTRINDFQKVNSI--PLARLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAFGSSYEEGRXIFQLPAEL 716
            VGD+KE+    +EA ++P+  ++DI  R+ P ++  +N YG+NSF W G  PR+++M P+ IK + T  + +QK   +  PL + L+ G+ + EG KW+KHR++I+PAF  EKLK MLPAF +   +++TKWEK    +GS E+D++P    LTSDVIS+ AFGS+YEEG  IF+L  EL
Sbjct:   56 VGDVKESGKMHQEALSKPMEFNNDIVPRLMPHINHTINTYGRNSFTWMGRIPRIHVMEPELIKEVLTHSSKYQKNFDVHNPLVKFLLTGVGSFEGAKWSKHRRIISPAFTLEKLKSMLPAFAICYHDMLTKWEKIAEKQGSHEVDIFPTFDVLTSDVISKVAFGSTYEEGGKIFRLLKEL 235          

HSP 2 Score: 65.0846 bits (157), Expect = 3.946e-55
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   25 EMELPLKSIALTIVIVTVLTWAWRVLNWVWLRPKKLEKFLRQQGLKGNSYRLLL 186
            +M+   K+IA TI  + V+ WAWRVL+W W  PK++EK LRQQG +GN YR L+
Sbjct:    4 DMDTIRKAIAATIFAL-VMAWAWRVLDWAWFTPKRIEKRLRQQGFRGNPYRFLV 56          
BLAST of FC930791 vs. ExPASy Swiss-Prot
Match: CP4F8_HUMAN (Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 3
Query:  279 LHKLVNDYGKNSFMWFGP-TPRVNIMNPDQIKAIFTR---INDFQKVNSIPLARLLIVGLATLEGEKWAKHRKLINPAFHQEKLKLMLPAFYLSCIEIITKWEKQMSVEGSSELDVWPYLANLTSDVISRTAF 665
            L +LV  Y +    W GP TP +N+ +PD ++++      I D   V    L   L  GL    G+KW  HR+L+ PAFH   LK  +  F  S   +  KW++ +++EGS+ LDV+ +++ +T D + +  F
Sbjct:   77 LTQLVATYPQGFVRWLGPITPIINLCHPDIVRSVINTSDAITDKDIVFYKTLKPWLGDGLLLSVGDKWRHHRRLLTPAFHFNILKPYIKIFSKSANIMHAKWQR-LAMEGSTCLDVFEHISLMTLDSLQKCIF 208          
The following BLAST results are available for this feature:
BLAST of FC930791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C72A1_CATRO3.946e-5546.11Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
CP4F8_HUMAN2.987e-1133.08Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionC34109A12EF PostHarvP1 Citrus clementina cDNA clone C34109A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930791 ID=FC930791; Name=FC930791; organism=Citrus clementina; type=EST; length=718bp
GAAATCCACAAAATCTGTCGGTGTGAAATGGAGTTGCCTCTGAAATCCAT
AGCTTTGACCATTGTTATTGTAACGGTGCTAACATGGGCATGGAGAGTGC
TGAACTGGGTGTGGCTGAGGCCCAAGAAGCTGGAGAAATTCCTGAGACAG
CAAGGTTTAAAAGGCAATTCTTACAGGCTTCTGTTGGTGACTTGAAAGAA
AATTTCATCGAGTTGAAGGAAGCAAAAGCCAGACCCCTCAGTTTGGATGA
CGATATTGCTATTCGTGTCAATCCATTCCTTCATAAACTGGTAAATGATT
ATGGTAAGAATTCTTTCATGTGGTTTGGTCCGACACCAAGGGTGAATATT
ATGAATCCTGATCAAATAAAAGCGATATTTACCAGGATCAATGATTTTCA
AAAAGTCAATTCAATCCCACTTGCCAGGCTGCTGATAGTTGGATTGGCTA
CCCTTGAGGGGGAGAAGTGGGCTAAACATAGAAAACTCATCAACCCAGCC
TTCCACCAAGAGAAGCTCAAGCTTATGTTGCCAGCATTCTACTTGAGTTG
TATCGAAATAATTACAAAGTGGGAGAAGCAAATGTCTGTAGAAGGATCAT
CTGAGTTGGATGTATGGCCTTATCTTGCAAATTTGACAAGTGATGTGATT
TCTCGAACGGCTTTTGGGAGTAGTTATGAAGAAGGAAGAANGATTTTTCA
GCTCCCAGCAGAGCTAGC
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