FC930793

Overview
NameFC930793
Unique NameFC930793
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930793_ssr32 microsatellite FC930793_ssr32:32..43. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig428 contig Ccv1_Contig428:118..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930793 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 69/186 (37.10%), Postives = 101/186 (54.30%), Query Frame = 2
Query:   47 MKTSFVVKLSFLILALATKAQ---LGTSESEPVLDVYGNKVESNLEYKLLEVKNGTSGGFSIHGGTSGE-CPLDVVQLSSPTERDHYVRLLPFDNST-VVRESTDLNL-----------IEPVWTVGNYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVSIYNLVHCPSVCDSCVKLCNKVG 556
            MKT+  V L  L+ A  +K+    +  + + PVLD  G+++++ ++Y +L   +G  GG    G  +G+ CP  VVQ  S  +    V     D+   VVR STD+N+              VW + NY++S GKW++TT G+ G PG  TL +WFK+EK  V  Y    CPSVCDSC  LC+ +G
Sbjct:    1 MKTATAVVL--LLFAFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLGYKFRFCPSVCDSCTTLCSDIG 184          
BLAST of FC930793 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 2.973e-22
Identity = 67/194 (34.54%), Postives = 98/194 (50.52%), Query Frame = 2
Query:   47 MKTSFVVKLSFL----ILALATKAQLGTSES--EPVLDVYGNKVESNLEYKLLEVKNGTSGGFSIHGGTSGE---CPLDVVQLSSPTERDHYVRLLPFD-NSTVVRESTDLNL-----------IEPVWTVGNYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVS-IYNLVHCPSVCDSCVKLCNKVGIF 562
            MK   ++ LSF     +LA A    L  ++S   PVLD+ G K+ +   Y ++ V     GG ++   T      CP  VVQ     + D  +   P +    VVR STDLN+              VW +  Y++S G++F+T GG+ G+PG +T+ +WFK+E+   S  Y LV CP+VC SC   C  VGI+
Sbjct:    1 MKELTMLSLSFFFVSALLAAAANPLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGFYKLVFCPTVCGSCKVKCGDVGIY 194          
BLAST of FC930793 vs. ExPASy Swiss-Prot
Match: SPI5_SOLTU (Serine protease inhibitor 5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 54/172 (31.40%), Postives = 81/172 (47.09%), Query Frame = 2
Query:  119 SESEPVLDVYGNKVESNLEYKLLEVKNGTSGG--------------------FSIHGGTSGECPLDVVQLSS---PTERDHYVRLLPFDNSTVVRESTDLNLIEPVWTVGNYNDSLGKWFLTTGGIIGHPGAKTLLNWFKLEKVSVSIYNLVHCPSVCDSCVKLCNKVGIFY 565
            S++ PVLDV G +++  L Y+++ +  G  GG                    F+   G SG  P+  +  SS   P   +  +  + FD STV      L +   +W VG+Y+ SLG   L TGG IG   +    +WFK+ K S   YNL++CP   D   + C KVG+ +
Sbjct:   31 SDATPVLDVTGKELDPRLSYRIISIGRGALGGDVYLGKSPNSDAPCANGVFRFNSDVGPSGT-PVRFIGSSSHFGPHIFEGELLNIQFDISTV-----KLCVSYTIWKVGDYDASLGTMLLETGGTIGQADS----SWFKIVKSSQLGYNLLYCPFSSDD--QFCLKVGVVH 190          
The following BLAST results are available for this feature:
BLAST of FC930793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC8.358e-2537.1021 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU2.973e-2234.54Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
SPI5_SOLTU5.260e-1131.40Serine protease inhibitor 5 OS=Solanum tuberosum P... [more]
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Properties
Property NameValue
Genbank descriptionC34109B02EF PostHarvP1 Citrus clementina cDNA clone C34109B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930793 ID=FC930793; Name=FC930793; organism=Citrus clementina; type=EST; length=727bp
GAACACAACAAACAGAAGTTAGCTATCCTTCAAATAAATAAATAAAATGA
AGACTTCATTCGTAGTAAAACTCTCATTCCTTATCCTTGCCTTGGCCACA
AAAGCTCAGTTGGGCACCTCAGAATCTGAACCAGTCTTAGATGTCTATGG
CAACAAGGTCGAATCCAACCTCGAGTATAAGCTTCTCGAAGTCAAAAATG
GCACTAGTGGTGGATTCAGTATACATGGAGGCACAAGTGGAGAGTGTCCG
TTGGACGTTGTCCAACTAAGTTCTCCTACGGAAAGGGATCATTATGTAAG
ATTATTACCGTTTGACAATTCTACAGTTGTCCGGGAATCCACTGATCTCA
ACTTGATAGAACCAGTATGGACAGTTGGAAACTATAATGATTCATTAGGA
AAATGGTTTCTAACAACCGGCGGAATCATCGGCCACCCAGGAGCTAAAAC
GTTGCTAAATTGGTTTAAGCTTGAGAAAGTTAGTGTCAGTATATACAATC
TTGTTCATTGTCCATCTGTTTGCGATTCTTGCGTTAAACTCTGTAACAAA
GTCGGCATCTTCTATGTGGACGGCGTTCGACGTCTAGTTCTGGTTCGTGA
TGATGATCAGCCTCTGCGGTTGGTGTTATTTCCAGCTCCTAATCCTTCAA
GATCCTCTATGTAATGAATTACCTAGCTATATTATATATTCTGAATAATT
TACCCAGCTAGCTAGTACTCTAATCTC
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