FC930796

Overview
NameFC930796
Unique NameFC930796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930796_ssr97 microsatellite FC930796_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig584 contig Ccv1_Contig584:9..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS1_ARATH (Ribose-phosphate pyrophosphokinase 1 OS=Arabidopsis thaliana GN=PRS1 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.484e-49
Identity = 95/117 (81.20%), Postives = 107/117 (91.45%), Query Frame = 1
Query:  322 AAVRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            A V+CDM E+LN  NG P+IP++NERTLPKFLE+ARMEK+VNRT N R+KLFSGTANPAL+QEIA YMG++LGK+NIKRFADGEIYVQLQESVRGCDVYLVQPTC P NENLMELLI
Sbjct:   46 ACVKCDMPESLNVGNGNPSIPIINERTLPKFLESARMEKSVNRT-NTRLKLFSGTANPALAQEIAWYMGLDLGKVNIKRFADGEIYVQLQESVRGCDVYLVQPTCTPTNENLMELLI 161          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS2_SPIOL (Ribose-phosphate pyrophosphokinase 2, chloroplastic OS=Spinacia oleracea GN=PRS2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.245e-41
Identity = 77/116 (66.38%), Postives = 100/116 (86.21%), Query Frame = 1
Query:  325 AVRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +V+C+  E L   NGKP++P+L+E++LPKFL + R+E +VNR+ N R+KLFSG ANPAL++E+A YMG+ELGK+ IKRFADGEIYVQL+ESVRGCDV+++QPT PP NENLMELLI
Sbjct:   39 SVKCNTVEPLKLVNGKPSVPILDEQSLPKFLHSKRLESSVNRS-NTRLKLFSGLANPALAKEVAWYMGLELGKVKIKRFADGEIYVQLEESVRGCDVFIIQPTSPPANENLMELLI 153          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS2_ARATH (Ribose-phosphate pyrophosphokinase 2 OS=Arabidopsis thaliana GN=PRS2 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.108e-40
Identity = 79/121 (65.29%), Postives = 102/121 (84.30%), Query Frame = 1
Query:  310 VCNAAAVRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +C +   +C++ +ALN   G   +P++NE T+PKF +++R+EK+V+R  N ++KLFSGTANPALSQEIA YMG+ELGK++IKRFADGEIYVQL+ESVRGCDV+LVQPTC P NENLMELLI
Sbjct:   42 ICVSGYAKCNLPKALN---GNARVPIINETTIPKFFDSSRLEKSVSRN-NTKLKLFSGTANPALSQEIAWYMGLELGKVSIKRFADGEIYVQLKESVRGCDVFLVQPTCTPTNENLMELLI 158          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS1_SPIOL (Ribose-phosphate pyrophosphokinase 1 OS=Spinacia oleracea GN=PRS1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.120e-33
Identity = 65/95 (68.42%), Postives = 83/95 (87.37%), Query Frame = 1
Query:  388 LNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +++++ P F+ +   + ++NR  + R+++FSGTANPAL+QEIACYMG++LGKI IKRFADGEIYVQLQESVRGCDV+LVQPTCPP NENLMELLI
Sbjct:    1 MDQQSFPSFMASTHFDSSINRN-DTRLRIFSGTANPALAQEIACYMGLQLGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLI 94          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS1_ORYSJ (Ribose-phosphate pyrophosphokinase 1 OS=Oryza sativa subsp. japonica GN=Os02g0127700 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 9.484e-33
Identity = 72/115 (62.61%), Postives = 87/115 (75.65%), Query Frame = 1
Query:  328 VRCDMAEALNFPNGKPNIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            VRC   + L   NG P    ++ R+L   + T  + +  N   + R+++FSGTANP+LSQEIA Y+G+ELGKINIKRFADGEIYVQLQESVRGCDV+LVQPTCPP NENLMELLI
Sbjct:   35 VRCKKIDQLRAVNGIPPYAPVSNRSLLSPV-TLPIIRDANIKNDTRLRIFSGTANPSLSQEIASYLGLELGKINIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLI 148          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS5_ARATH (Ribose-phosphate pyrophosphokinase 5 OS=Arabidopsis thaliana GN=PRS5 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.113e-32
Identity = 67/116 (57.76%), Postives = 87/116 (75.00%), Query Frame = 1
Query:  328 VRCDMAEALNFPNGKP-NIPVLNERTLPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            ++C+ A+   F  G      +L   T+P      R+E ++ + T  R+++FSGTANP L+QEI+CY+G++LGKI IKRFADGEIYVQLQESVRGCDV+LVQPTCPP NENLMELL+
Sbjct:   32 LKCNAADPYKFDGGNSAGFHLLTGDTVPASFSRTRLEDSIYQNTT-RLRIFSGTANPILAQEISCYLGLDLGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLV 146          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS2_ORYSJ (Ribose-phosphate pyrophosphokinase 2 OS=Oryza sativa subsp. japonica GN=Os06g0617800 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-26
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 1
Query:  418 ETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            + AR+        ++R+K+FSGTAN  L+QEIA Y+GV+LGK+ IKRFADGEIYVQLQESVRGCDV+LVQPTC P NENLMEL +
Sbjct:   74 QEARLAALRTDGRDSRLKIFSGTANRPLAQEIASYLGVDLGKVLIKRFADGEIYVQLQESVRGCDVFLVQPTCSPVNENLMELFV 158          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_PROMM (Ribose-phosphate pyrophosphokinase OS=Prochlorococcus marinus (strain MIT 9313) GN=prs PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.612e-24
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 1
Query:  403 LPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +  FL  AR E+        R++LFSGT+NPAL++EIA Y+GV  G    KRFADGE+YVQ+QES+RGCDV+L+QPTC P N+NLMELLI
Sbjct:    1 MTSFLTAARTEQESISYDMQRLRLFSGTSNPALAREIAAYLGVPDGPRICKRFADGELYVQIQESIRGCDVFLIQPTCAPVNDNLMELLI 90          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_SYNPX (Ribose-phosphate pyrophosphokinase OS=Synechococcus sp. (strain WH8102) GN=prs PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.793e-23
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1
Query:  403 LPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +  FL  AR E+        R++LFSGT+NP L++EIA Y+GV  G    KRFADGE+YVQ+QES+RGCDV+L+QPTC P N++LMELLI
Sbjct:    1 MTSFLTAARAEQEKLTPDTRRLRLFSGTSNPGLAREIAAYLGVPDGPRVCKRFADGELYVQIQESIRGCDVFLIQPTCAPVNDHLMELLI 90          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_SYNE7 (Ribose-phosphate pyrophosphokinase OS=Synechococcus elongatus (strain PCC 7942) GN=prs PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.813e-23
Identity = 48/72 (66.67%), Postives = 65/72 (90.28%), Query Frame = 1
Query:  457 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N+R++LFSG++N ALSQE++ Y+G++LG +  KRFADGE+YVQ+QES+RGCDVYL+QPTC P N++LMELLI
Sbjct:   19 NHRLRLFSGSSNSALSQEVSRYLGIDLGPMIRKRFADGELYVQIQESIRGCDVYLMQPTCWPVNDHLMELLI 90          
The following BLAST results are available for this feature:
BLAST of FC930796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
KPRS1_ARATH2.484e-4981.20Ribose-phosphate pyrophosphokinase 1 OS=Arabidopsi... [more]
KPRS2_SPIOL7.245e-4166.38Ribose-phosphate pyrophosphokinase 2, chloroplasti... [more]
KPRS2_ARATH2.108e-4065.29Ribose-phosphate pyrophosphokinase 2 OS=Arabidopsi... [more]
KPRS1_SPIOL1.120e-3368.42Ribose-phosphate pyrophosphokinase 1 OS=Spinacia o... [more]
KPRS1_ORYSJ9.484e-3362.61Ribose-phosphate pyrophosphokinase 1 OS=Oryza sati... [more]
KPRS5_ARATH2.113e-3257.76Ribose-phosphate pyrophosphokinase 5 OS=Arabidopsi... [more]
KPRS2_ORYSJ5.041e-2667.06Ribose-phosphate pyrophosphokinase 2 OS=Oryza sati... [more]
KPRS_PROMM3.612e-2460.00Ribose-phosphate pyrophosphokinase OS=Prochlorococ... [more]
KPRS_SYNPX1.793e-2357.78Ribose-phosphate pyrophosphokinase OS=Synechococcu... [more]
KPRS_SYNE76.813e-2366.67Ribose-phosphate pyrophosphokinase OS=Synechococcu... [more]

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Properties
Property NameValue
Genbank descriptionC34109B05EF PostHarvP1 Citrus clementina cDNA clone C34109B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930796 ID=FC930796; Name=FC930796; organism=Citrus clementina; type=EST; length=674bp
GATGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGC
AACCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAA
GAAAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCT
GAAACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTC
ACAATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTT
TCGGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCT
CGGGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGC
ATTGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGA
CGCTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGA
ACTACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCT
TTCCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACA
TAAAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTT
AGAGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCCGGCAATGA
AAATCTCATGGAGCTTTTGATAAT
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