FC930797

Overview
NameFC930797
Unique NameFC930797
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13228 contig Ccv1_Contig13228:150..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930797 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.256e-15
Identity = 53/145 (36.55%), Postives = 68/145 (46.90%), Query Frame = 1
Query:  265 MDAIFEGFPGSMDGFKFPASSCSNQNLANAFKLKHNSTNHHPPFLETNPHPPAGXXXXXXXXXXXXXXXXXAVLKYISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLGQKYP----PSPNHVLPCLGQNIDSPDVHYTSSSS 687
            M +   GFPGS+D F FP              L + S  +  P L+    PP                   +VLKYIS++LMEED+E K CM  D L+LQAAEKS Y+ LG+KYP      P      L Q + SP     +SS+
Sbjct:    1 MGSYSAGFPGSLDWFDFPG-------------LGNGSYLNDQPLLDIGSVPPPLDPYPQQNLASADADFSDSVLKYISQVLMEEDMEDKPCMFHDALSLQAAEKSLYEALGEKYPVDDSDQPLTTTTSLAQLVSSPGGSSYASST 132          
BLAST of FC930797 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 56/151 (37.09%), Postives = 71/151 (47.02%), Query Frame = 1
Query:  280 EGFPGSMD------GFKFPASSCSNQNLANAFKLKH-NSTNHHPPFL------ETNPHPPAGXXXXXXXXXXXXXXXXXAVLKYISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLGQKYPPSPNHVLPCLGQNIDSPDVHYTSSSSGS 693
            +GFPGSMD       F  P SS     LAN F L   + ++  PP          N                       +VLKYIS++LMEED+E K CM  D LALQAAEKS Y+ LG+KYP S +        ++D P+   + S  GS
Sbjct:    6 DGFPGSMDELDFNKDFDLPPSSNQTLGLANGFYLDDLDFSSLDPPEAYPSQNNNNNNINNKAVAGDLLSSSSDDADFSDSVLKYISQVLMEEDMEEKPCMFHDALALQAAEKSLYEALGEKYPSSSS------ASSVDHPERLASDSPDGS 150          
BLAST of FC930797 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  478 AVLKYISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLGQKYPPSPNHVLPCLGQNIDSPD 663
            AVL YIS++L EED++ K CMLQ+ L L+AAE+S Y+ +G+KYPPSP   L    +N ++ D
Sbjct:   80 AVLGYISQMLNEEDMDDKVCMLQESLDLEAAERSLYEAIGKKYPPSPERNLAFAERNSENLD 141          
BLAST of FC930797 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 49/121 (40.50%), Postives = 64/121 (52.89%), Query Frame = 1
Query:  265 MDAIFEGFPGSMDGFKFPASSCSNQNLANAFKLKHNSTNHHPPFLET----NPHPPAGXXXXXXXXXXXXXXXXXAVLKYISEILMEEDLEGKTCMLQDCLALQAAEKSFYDVLGQKYPPS 615
            MDAI    P  +DGF+F   S S     N   L+  +TN    F E+    NP P                     V KYI+++LMEEDLEG++CML+D LALQAAE+SF++VL  + P S
Sbjct:    1 MDAIL---PVPVDGFRFDTGSGSCCKPRN--NLESGTTNRFTCFNESESQSNPSPTESKVCSDYLP----------VFKYINDMLMEEDLEGQSCMLEDSLALQAAERSFFEVLQDQTPIS 106          
The following BLAST results are available for this feature:
BLAST of FC930797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SCL33_ARATH4.256e-1536.55Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
SCL14_ARATH3.603e-1437.09Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
SCL9_ARATH3.728e-1151.61Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SCL30_ARATH3.728e-1140.50Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionC34109B06EF PostHarvP1 Citrus clementina cDNA clone C34109B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930797 ID=FC930797; Name=FC930797; organism=Citrus clementina; type=EST; length=695bp
ATACAGTGAAAACTCAACTTCGAGAACATGCCGAGGTTTGATTGAGGTGC
CCTTCATTCTTCTTTGATTCAATTAATATTCTCTTCAATCTGTCAATTAT
TTGTGCTTGATTTTGTACTCTTGCATAAATTTCCGGTCTTGTTCTTGAGT
TTCTGAGATATATCCCGCCATAAAAATCGCAGCATTTTATTTCATTTCTT
GACTCAAAACTTAAATTCTTCATCATAAACTTCCCATTAGATATATCCTC
TCATAAAGGTTTGTATGGATGCCATTTTTGAGGGATTTCCAGGATCCATG
GATGGGTTCAAATTTCCAGCTTCATCCTGTTCGAATCAGAATCTTGCTAA
TGCATTCAAACTGAAACATAACTCCACAAATCATCATCCACCTTTCCTTG
AAACCAATCCTCATCCTCCTGCTGGTGACAATTTAAACTCAGATGGAGAC
TCTCCGGACAGCAGTGACTTCTCCAATGCTGTTCTCAAATACATAAGTGA
GATTCTCATGGAAGAGGACTTGGAAGGGAAGACCTGCATGTTACAGGACT
GCTTGGCTCTCCAAGCTGCTGAAAAGTCCTTTTATGATGTCCTTGGTCAG
AAGTACCCTCCTTCGCCGAACCATGTCCTGCCTTGTTTGGGGCAAAACAT
CGATAGCCCAGATGTTCATTACACCAGTAGCAGCAGCGGCAGCAG
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