FC930798

Overview
NameFC930798
Unique NameFC930798
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930798 vs. ExPASy Swiss-Prot
Match: MEL26_CAEEL (Protein maternal effect lethal 26 OS=Caenorhabditis elegans GN=mel-26 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  290 SAQSTLRCLARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMF-HHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLALLGAANKYDIADLKDACEESLLEDI 640
            S Q  +    R+  + +L D  I+     ++AHKAVL+A SPVF +M  H D  E +SS +YI DM  +    ++ Y+Y     +D      ALL AA+KY + +LK  CE+ L+E+I
Sbjct:  183 SEQQLIEDYQRLFSQELLCDFAINVNGKIIRAHKAVLAARSPVFNAMLTHQDTDEAKSSMMYINDMDYDVIYEMVYYIYCGRCNKDITDMATALLIAADKYRLEELKSHCEKYLVENI 300          
BLAST of FC930798 vs. ExPASy Swiss-Prot
Match: TDPZ3_MOUSE (TD and POZ domain-containing protein 3 OS=Mus musculus GN=Tdpoz3 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.916e-11
Identity = 38/111 (34.23%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  314 LARMLDEGILADTVIHTADGTLKAHKAVLSASSPVFQSMFHHDLKEKESSTIYIEDMSVESCMALLSYLYGTIKQEDFWKHRLA--LLGAANKYDIADLKDACEESLLEDI 640
            L  + D  +  D  +  A    KAHKA+L+A SPVF++MF H++KE   + I I D+ ++    ++ ++Y T K      H +A  +L AA+KY +  LK  CE+ L  ++
Sbjct:  178 LGELWDNSLFTDCCLLVAGHEFKAHKAILAARSPVFRAMFEHEMKESLKNPIEIMDLDLDVFKEMMGFIY-TGKAPHLHSHSMACDVLPAADKYGLVGLKVLCEDVLCRNL 287          
The following BLAST results are available for this feature:
BLAST of FC930798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MEL26_CAEEL1.567e-1337.29Protein maternal effect lethal 26 OS=Caenorhabditi... [more]
TDPZ3_MOUSE1.916e-1134.23TD and POZ domain-containing protein 3 OS=Mus musc... [more]
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Properties
Property NameValue
Genbank descriptionC34109B07EF PostHarvP1 Citrus clementina cDNA clone C34109B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930798 ID=FC930798; Name=FC930798; organism=Citrus clementina; type=EST; length=647bp
GTATCTGTACGTACGTTTGTTTCCGGAGCCGTCTCGTTTGTCGAAAGAAC
AGCCGCCGTTTGCAAGATTCATTATTCGTGTCTCCAATGGCGGCGCCAAT
CGGAGACTTTATATCTCTCAAGTTAATGAGCGATTGCTTCGGACGTGTGA
AGACTTTGTCTGGTATGTCGATTGCACCATTCATGGCCGCTTCATTGTTG
ATGTTGAGTTTCTGGAGCTGAAGATCTACCCCCTGAATGGTGGTGATGCC
AGTTCTGTATGGCCCAGTGATGGAATGATGCAGTCTGTTTCAGCCCAAAG
CACACTTCGATGCCTCGCTCGCATGCTTGATGAGGGCATCCTTGCAGATA
CTGTTATCCATACTGCTGACGGCACTCTAAAAGCTCACAAGGCAGTTCTC
TCTGCAAGTTCTCCAGTTTTCCAGAGCATGTTCCATCATGACCTCAAGGA
AAAAGAGTCGTCAACAATCTACATAGAAGACATGTCAGTCGAATCTTGCA
TGGCCCTTCTTAGTTACTTGTACGGAACCATAAAACAAGAAGATTTCTGG
AAACACAGGCTGGCTTTGCTGGGGGCAGCAAACAAGTACGACATTGCAGA
CTTAAAAGATGCTTGTGAGGAAAGCCTTTTGGAAGATATCATTCGGG
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