FC930799

Overview
NameFC930799
Unique NameFC930799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15216 contig Ccv1_Contig15216:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_ARATH (COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3 PE=1 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.643e-76
Identity = 145/230 (63.04%), Postives = 177/230 (76.96%), Query Frame = 1
Query:    1 TALKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN 690
            +AL D L+  +D LR+E     S LDQLD SKHSLGYLYFLE      ++KE+A   +PIIARFI SC A QIR    KF+++CK  KD V+ L  P+RGVGP+L A++K+Q S++ LT LHP+ LQLCL AK YK+G S+L DDI EI+ PRDFFLY YYGGMI IG KRF+KALELL+NVVTAPM  +NAIA+EAYKKYILVSLIH+GQF++TLPK  S+AAQR+ KN
Sbjct:   26 SALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLYFLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLRGVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYSYYGGMICIGLKRFQKALELLYNVVTAPMHQVNAIALEAYKKYILVSLIHNGQFTNTLPKCASTAAQRSFKN 255          
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_DANRE (COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.118e-35
Identity = 88/237 (37.13%), Postives = 128/237 (54.01%), Query Frame = 1
Query:    1 TALKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNL 693
            T L + +    +LL    + L + L  LD  +HSLG L  L    +         TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+  +  AI K+Q +T  LT++H +  QLCLLAKC+K  +  LE D+ +I         + F  Y YYGGMI+ G K F +AL      +T P  +++ I +EAYKKYILVSLI HG+    LPKYTS    R +K L
Sbjct:   22 TQLCELINKSGELLAKNLSHLDTVLGALDIQEHSLGVLAVLF-VKFSMPNIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGISILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAVPFLELDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFFEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ-LPKYTSQIVGRFIKPL 256          
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_PONAB (COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.653e-34
Identity = 87/237 (36.71%), Postives = 129/237 (54.43%), Query Frame = 1
Query:    1 TALKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNL 693
            T L + +    +LL    + L + L  LD  +HSLG L  L    +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I         + F  Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    LPKYTS    R +K L
Sbjct:   22 TQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLF-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ-LPKYTSQIVGRFIKPL 256          
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_MACFA (COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.653e-34
Identity = 87/237 (36.71%), Postives = 129/237 (54.43%), Query Frame = 1
Query:    1 TALKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNL 693
            T L + +    +LL    + L + L  LD  +HSLG L  L    +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I         + F  Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    LPKYTS    R +K L
Sbjct:   22 TQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLF-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ-LPKYTSQIVGRFIKPL 256          
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_HUMAN (COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.653e-34
Identity = 87/237 (36.71%), Postives = 129/237 (54.43%), Query Frame = 1
Query:    1 TALKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNL 693
            T L + +    +LL    + L + L  LD  +HSLG L  L    +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I         + F  Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    LPKYTS    R +K L
Sbjct:   22 TQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLF-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ-LPKYTSQIVGRFIKPL 256          
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_RAT (COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 87/237 (36.71%), Postives = 129/237 (54.43%), Query Frame = 1
Query:    1 TALKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNL 693
            T L + +    +LL    + L + L  LD  +HSLG L  L    +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I         + F  Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    LPKYTS    R +K L
Sbjct:   22 TQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLF-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ-LPKYTSQIVGRFIKPL 256          
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_MOUSE (COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 87/237 (36.71%), Postives = 129/237 (54.43%), Query Frame = 1
Query:    1 TALKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNL 693
            T L + +    +LL    + L + L  LD  +HSLG L  L    +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I         + F  Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    LPKYTS    R +K L
Sbjct:   22 TQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLF-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ-LPKYTSQIVGRFIKPL 256          
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_BOVIN (COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.465e-34
Identity = 86/237 (36.29%), Postives = 129/237 (54.43%), Query Frame = 1
Query:    1 TALKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNL 693
            T L + +    +LL    + L + L  LD  +HSLG L  L    +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+G +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I         + F  Y YYGGM++ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    LPKYTS    R +K L
Sbjct:   22 TQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLF-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGVLRQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDAKHFLCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ-LPKYTSQIVGRFIKPL 256          
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_CHICK (COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.720e-33
Identity = 86/237 (36.29%), Postives = 128/237 (54.01%), Query Frame = 1
Query:    1 TALKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNL 693
            T L + +    +LL    + L + L  LD  +HSLG L  L    +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+  +  AI K+Q +T  LT++H +  QLCLLAKC+K  L  L+ D+ +I         + F  Y YYGGMI+ G K F +AL      +T P  +++ I +E+YKKYILVSLI  G+    LPKYTS    R +K L
Sbjct:   22 TQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLF-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGISILRQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ-LPKYTSQIVGRFIKPL 256          
BLAST of FC930799 vs. ExPASy Swiss-Prot
Match: CSN3_XENTR (COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.246e-33
Identity = 86/237 (36.29%), Postives = 128/237 (54.01%), Query Frame = 1
Query:    1 TALKDYLKAGEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNL 693
            T L + +    +LL    + L + L  LD  +HSLG L  L    +   +     TL   +  FI++C+ E IRY  + F  +C +  + ++  + P+RG+  +  AI K+Q +   LT++H +  QL LLAKC+K  L+ L+ D+ +I         + F  Y YYGGMI+ G K F +AL      +T P  +++ I +EAYKKYILVSLI HG+    LPKYTS    R +K L
Sbjct:   22 TQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLF-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGICVLRQAIDKMQMNANQLTSIHADLCQLSLLAKCFKPALAYLDVDMMDICKENGAYDAKPFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ-LPKYTSQIVGRFIKPL 256          
The following BLAST results are available for this feature:
BLAST of FC930799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CSN3_ARATH1.643e-7663.04COP9 signalosome complex subunit 3 OS=Arabidopsis ... [more]
CSN3_DANRE9.118e-3537.13COP9 signalosome complex subunit 3 OS=Danio rerio ... [more]
CSN3_PONAB2.653e-3436.71COP9 signalosome complex subunit 3 OS=Pongo abelii... [more]
CSN3_MACFA2.653e-3436.71COP9 signalosome complex subunit 3 OS=Macaca fasci... [more]
CSN3_HUMAN2.653e-3436.71COP9 signalosome complex subunit 3 OS=Homo sapiens... [more]
CSN3_RAT3.465e-3436.71COP9 signalosome complex subunit 3 OS=Rattus norve... [more]
CSN3_MOUSE3.465e-3436.71COP9 signalosome complex subunit 3 OS=Mus musculus... [more]
CSN3_BOVIN3.465e-3436.29COP9 signalosome complex subunit 3 OS=Bos taurus G... [more]
CSN3_CHICK1.720e-3336.29COP9 signalosome complex subunit 3 OS=Gallus gallu... [more]
CSN3_XENTR2.246e-3336.29COP9 signalosome complex subunit 3 OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionC34109B08EF PostHarvP1 Citrus clementina cDNA clone C34109B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930799 ID=FC930799; Name=FC930799; organism=Citrus clementina; type=EST; length=736bp
ACAGCCCTTAAGGATTACTTGAAAGCAGGTGAAGATTTGCTCCGCTCTGA
GTCGACTCGCTTGCTGTCGTTTCTCGACCAGCTCGACCCCTCCAAGCACT
CCCTCGGTTACCTTTATTTCTTAGAGCCATGTATGTACTGTTCGATAACG
AAAGAGCGAGCAAACACACTGGTTCCAATCATTGCTCGATTCATTACTTC
TTGTTCTGCGGAGCAGATTCGTTACGTGCCAGAGAAGTTCATCAATGTTT
GTAAGAGGTATAAGGATCAAGTGTTGCTGCTTGAAGCACCCATCAGAGGG
GTGGGTCCAATGCTGACCGCTATCCGCAAGATTCAGTCCTCCACTGAGCA
TTTGACCACTTTGCATCCAGAGTTTCTTCAACTTTGTCTATTGGCTAAGT
GCTATAAAGCTGGTCTTTCTGTTTTAGAGGATGACATTTATGAGATTAAT
CTGCCAAGGGACTTTTTTCTCTATTGTTATTATGGTGGGATGATATTCAT
CGGGCAAAAGCGCTTTCGGAAAGCTTTGGAGCTTCTACACAATGTCGTGA
CTGCTCCTATGTCCAGTATCAATGCTATAGCTGTTGAAGCATACAAAAAA
TATATATTAGTTTCCCTCATTCACCATGGACAGTTCTCTTCCACCCTCCC
TAAGTACACTTCTTCAGCAGCTCAGAGGAATCTAAAGAATTTAGTCAGCC
TTACATGGAATTGGTTAATACCNTACATACTGGCAA
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