FC930802

Overview
NameFC930802
Unique NameFC930802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930802 vs. ExPASy Swiss-Prot
Match: FMP32_YEAST (Protein FMP32, mitochondrial OS=Saccharomyces cerevisiae GN=FMP32 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 44/157 (28.03%), Postives = 92/157 (58.60%), Query Frame = 3
Query:  171 QAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHALRAHMEAAKYDVIKYCIGTLVSISAVGLAIVRIL 641
            QA  I   +T+ +   + +V+     + ++ +    Q  + +K + ++ S+    F  +Q E E +++D+EK+R++LR EI K  AG +LDL+LE+GRIR+E ++ + +   +  K+++E+  ++  +++ K  V+++ IG      A+ LA +R+L
Sbjct:   50 QATTIVEIMTDAIRGGVNHVSQDLAKREKLTQLSYQQRVDFAKLRDQLLSADRSEFHNIQNEYESVKNDLEKLRNKLREEITKTNAGFKLDLSLEKGRIREESSHHDLQIKEIDTKIEQEVTNMKMQIDSVKTQVMQWLIGVCTGTFALVLAYMRLL 206          
BLAST of FC930802 vs. ExPASy Swiss-Prot
Match: CC90B_XENTR (Coiled-coil domain-containing protein 90B, mitochondrial OS=Xenopus tropicalis GN=ccdc90b PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 60/221 (27.15%), Postives = 108/221 (48.87%), Query Frame = 3
Query:   30 QGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRD--------------ELANQNAET----TNLTNKLDREIHALRAHMEAAKYDVIKYCIGTLVSISAVGLAIVRI 638
            +GF  + +   GY      +    +R    DT  LVR LE  G    QAE I +A+  + N S++ V    V++ + + T     A+L   + ++   ++  F+ L+ E EK++ ++E +R  L  E ++++A  +LD+NLER R+ D              E   +NA T    T +  K+D +I +L+  ME+ K D ++Y   ++ +  A+ L   R+
Sbjct:   45 KGFATSAALPAGYDVRQVEITPLEQRKLTFDTHALVRELETHGFDKVQAETIVSALATLTNASIDTVYRDMVTRAQQEITVQQIMAHLDSIRKDMVILEKSEFATLRAENEKMKIELEHVRQHLLNETNRISADAKLDMNLERSRLTDLFTEQEKKLMEASTEFHKKNATTDSVITEINKKIDIDIASLKTLMESHKLDTVRYMAASVFTCLAIALGFYRL 265          
BLAST of FC930802 vs. ExPASy Swiss-Prot
Match: CC90B_HUMAN (Coiled-coil domain-containing protein 90B, mitochondrial OS=Homo sapiens GN=CCDC90B PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 55/196 (28.06%), Postives = 101/196 (51.53%), Query Frame = 3
Query:  102 KRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAE----TTNLT--------------NKLDREIHALRAHMEAAKYDVIKYCIGTLVSISAVGLAIVR 635
            +R    DT  LV+ LE  G    QAE I +A+T + N SL+ +    V++ + + T     A+L   + ++   ++  F+ L+ E EK++ ++++++ +L +E  ++ A  +LD+NLER R+ D   +Q  +    TT  T              NK+D EI +L+  ME+ K + I+Y   ++ +  A+ L   R
Sbjct:   56 QRKLTFDTHALVQDLETHGFDKTQAETIVSALTALSNVSLDTIYKEMVTQAQQEITVQQLMAHLDAIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLMHETSRIRADNKLDINLERSRVTDMFTDQEKQLMETTTEFTKKDTQTKSIISETSNKIDAEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYR 251          
BLAST of FC930802 vs. ExPASy Swiss-Prot
Match: CC90B_MOUSE (Coiled-coil domain-containing protein 90B, mitochondrial OS=Mus musculus GN=Ccdc90b PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 52/196 (26.53%), Postives = 103/196 (52.55%), Query Frame = 3
Query:  102 KRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRD--------------ELANQNAETTNL----TNKLDREIHALRAHMEAAKYDVIKYCIGTLVSISAVGLAIVR 635
            +R    DT  LV+ LE  G    QA+ I + ++ + N SL+ +    V+K + + T     A+L   + ++   ++  F+ L+ E EK++ ++++++ +L  E  ++ A  +LD+NLER R+ D              E A ++ +T ++    +NK+D EI +L+  ME++K + I+Y   ++ +  A+ L   R
Sbjct:   56 QRKLTFDTHALVQDLETHGFDKTQAQTIVSVLSTLSNVSLDTIYKEMVTKAQQEITVQQLMAHLDSIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLTNETSRIRADNKLDINLERSRVTDMFTDQEKQLIEATNEFAKKDTQTKSIISETSNKIDTEIASLKTLMESSKLETIRYLAASVFTCLAIALGFYR 251          
BLAST of FC930802 vs. ExPASy Swiss-Prot
Match: CC90B_RAT (Coiled-coil domain-containing protein 90B, mitochondrial OS=Rattus norvegicus GN=Ccdc90b PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 55/196 (28.06%), Postives = 100/196 (51.02%), Query Frame = 3
Query:  102 KRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQN---AETTN---------------LTNKLDREIHALRAHMEAAKYDVIKYCIGTLVSISAVGLAIVR 635
            +R    DT  LV+ LE  G    QA+ I + ++ + N SL+ V    V+K + + T     A+L   + ++   ++  F+ L+ E EK++ ++++++ +L  E  ++ A  RLD+NLER R+ D   +Q     E TN                +NK+D EI +L+  ME++K + I+Y   ++ +  A+ L   R
Sbjct:   56 QRKLTFDTHALVQDLETHGFDKGQAQTIVSVLSTLSNVSLDTVYKEMVTKAQQEITIQQLMAHLDSIRKDMVILEKSEFANLRAENEKMKIELDQVKQQLINETSRIRADNRLDINLERSRVTDMFTDQEKQLMEATNEFTKKDMQTKSIISETSNKIDTEIASLKTLMESSKLETIRYLAASVFTCLAIALGFYR 251          
BLAST of FC930802 vs. ExPASy Swiss-Prot
Match: CC90A_XENTR (Coiled-coil domain-containing protein 90A, mitochondrial OS=Xenopus tropicalis GN=ccdc90a PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 57/227 (25.11%), Postives = 118/227 (51.98%), Query Frame = 3
Query:   15 RVNQFQGFNLNYSNTIGYRQISQLVKSNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANL-SKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELAN------------------QNAETTNLTNKLDREIHALRAHMEAAKYDVIKYCIGTLVSISAVGLAIVRI 638
            RV  F+ FN+  ++T+ Y    + + ++  + +  DT  +V+ LEA G  ++Q+E + +A+ ++LN ++  +    V+K E Q+  + Q  +L +  K ++   ++  FS L+ + EK++ ++++++ +L   I KV A  +LD NLE+ R+++  A+                  Q+   T    K+D E+  ++   E+ K D IKY  G++ +   + L   R+
Sbjct:   36 RVTCFRDFNI-ITSTMQYNLDKRNIYTSVGKHYFFDTHAVVQLLEANGFSAEQSEIVVSALVKILNVNMNLIHKDMVTK-EQQEISLQQVMSLIASVKKDMIILEKSEFSALRTQNEKVKIELQQLKKQLNDSIVKVRASNKLDFNLEKSRVKEMHADNERKLLELRTSIVELHSQQDRGLTQTKRKIDTEVSGVKTMQESHKLDTIKYLAGSVFTCLTIALGFYRL 260          
BLAST of FC930802 vs. ExPASy Swiss-Prot
Match: FMP32_SCHPO (Protein fmp32, mitochondrial OS=Schizosaccharomyces pombe GN=fmp32 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 46/175 (26.29%), Postives = 97/175 (55.43%), Query Frame = 3
Query:  120 DTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHALRAHMEAAKYDVIKYCIGTLVSISAVGLAIVRILM 644
            ++L+ VR L+  G+  K++E +   I+ V +D  E ++   V+K +  +    Q+ + +  +SE+QS +      L  + E+L SD+E++++  R +++  T+  RL LN++R    DE A+Q+ +   L+ ++D E+   R  + + K   +++  G +    A+ LA VR+++
Sbjct:   42 NSLRFVRVLQEAGIDDKKSETLMRLISNVYSDMHEKISDFSVTKEQQDRVMYQQKVDFAHLRSELQSIERQEMVALHSQVEQLFSDVERLKTSFRDQLNNSTSEARLQLNIDRLNHYDETASQDLKLRELSAEIDTEMSNFRTQLASFKTQTLQWVFGIVTGSGALLLAYVRLII 216          
BLAST of FC930802 vs. ExPASy Swiss-Prot
Match: CC90A_HUMAN (Coiled-coil domain-containing protein 90A, mitochondrial OS=Homo sapiens GN=CCDC90A PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 54/200 (27.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query:   93 SNGKRAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRD----------EL--------ANQNAETTNLTNKLDREIHALRAHMEAAKYDVIKYCIGTLVSISAVGLAIVRI 638
            S+G R    DT  LV  LE  G  ++QAE I +A+ ++L  +++ V    V+K + + T     + ++  K ++   ++  FS L+ E EK++ ++ +++ ++  E+ KV    +LD NLE+ R+++          EL        A Q+   T    K++ E+  L+  +E+ K D IKY  G++ +   V L   R+
Sbjct:  158 SSGSRKLYFDTHALVCLLEDNGFATQQAEIIVSALVKILEANMDIVYKDMVTKMQQEITFQQVMSQIANVKKDMIILEKSEFSALRAENEKIKLELHQLKQQVMDEVIKVRTDTKLDFNLEKSRVKELYSLNEKKLLELRTEIVALHAQQDRALTQTDRKIETEVAGLKTMLESHKLDNIKYLAGSIFTCLTVALGFYRL 357          
BLAST of FC930802 vs. ExPASy Swiss-Prot
Match: CC90A_MOUSE (Coiled-coil domain-containing protein 90A, mitochondrial OS=Mus musculus GN=Ccdc90a PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 54/198 (27.27%), Postives = 99/198 (50.00%), Query Frame = 3
Query:  105 RAFLVDTLQLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQE--ANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRD----------EL--------ANQNAETTNLTNKLDREIHALRAHMEAAKYDVIKYCIGTLVSISAVGLAIVRI 638
            R    DT  LV  LEA G   +QAE I +A+ ++   ++  +    VSK  MQ+   +Q+  + ++  K ++   ++  FS L+ E EK++ ++ +++ ++  E+ KV    +L+ NLE+ R+++          EL        A Q+   T    K++ E+  L+  +EA K D IKY  G++ +   V L   R+
Sbjct:  143 RQLYFDTHALVCLLEANGFTIQQAEIIVSALVKITETNMNIIYKDMVSK--MQQEIALQQVLSKIANVKKDMVILEKSEFSALRAENEKIKLELHQLKQQVMDEVTKVRTDTKLNFNLEKSRVKELYSLNEKKMLELRTEIVSLHAQQDRALTQTDRKIETEVAGLKTMLEAHKLDTIKYLAGSVFTCLTVALGFYRL 338          
BLAST of FC930802 vs. ExPASy Swiss-Prot
Match: YAN8_SCHPO (Uncharacterized CCDC90 family protein C3H1.08c, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC3H1.08c PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.893e-12
Identity = 42/168 (25.00%), Postives = 83/168 (49.40%), Query Frame = 3
Query:  129 QLVRGLEAQGVPSKQAEAITAAITEVLNDSLENVAHTFVSKGEMQKTEMIQEANLSKFKSEVQSSQEHHFSMLQRETEKLRSDIEKMRSELRYEIDKVTAGQRLDLNLERGRIRDELANQNAETTNLTNKLDREIHALRAHMEAAKYDVIKYCIGTLVSISAVGLAIV 632
            Q  R LE  G   K AE IT  +  +  ++L  +      K + +     Q+    + +  +++ +E+ F  +++ ++KL ++IEK +S LR ++    +  RL+LNLE+GR++D   ++N        K+  E+  L   +   K    ++  G +  +S+V L I+
Sbjct:   41 QSSRRLEQAGYSVKNAETITNLMRTITGEALTELEKNIGFKAKQESVSFQQKRTFLQIRKYLETIEENEFDKVRKSSDKLINEIEKTKSSLREDVKTALSEVRLNLNLEKGRMKDAATSRNTNIHENETKILNEVDILHKEINDMKIQTNQWFTGFVGVVSSVVLIIL 208          
The following BLAST results are available for this feature:
BLAST of FC930802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
FMP32_YEAST7.935e-1928.03Protein FMP32, mitochondrial OS=Saccharomyces cere... [more]
CC90B_XENTR7.935e-1927.15Coiled-coil domain-containing protein 90B, mitocho... [more]
CC90B_HUMAN7.935e-1928.06Coiled-coil domain-containing protein 90B, mitocho... [more]
CC90B_MOUSE3.938e-1826.53Coiled-coil domain-containing protein 90B, mitocho... [more]
CC90B_RAT6.718e-1828.06Coiled-coil domain-containing protein 90B, mitocho... [more]
CC90A_XENTR3.334e-1725.11Coiled-coil domain-containing protein 90A, mitocho... [more]
FMP32_SCHPO4.354e-1726.29Protein fmp32, mitochondrial OS=Schizosaccharomyce... [more]
CC90A_HUMAN3.686e-1627.00Coiled-coil domain-containing protein 90A, mitocho... [more]
CC90A_MOUSE1.186e-1427.27Coiled-coil domain-containing protein 90A, mitocho... [more]
YAN8_SCHPO1.893e-1225.00Uncharacterized CCDC90 family protein C3H1.08c, mi... [more]
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Properties
Property NameValue
Genbank descriptionC34109B11EF PostHarvP1 Citrus clementina cDNA clone C34109B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930802 ID=FC930802; Name=FC930802; organism=Citrus clementina; type=EST; length=681bp
AGGAGAAAAGTGTTCGCGTTAATCAATTTCAAGGTTTTAATTTGAATTAC
TCGAATACTATCGGTTATCGCCAGATTTCGCAGCTTGTTAAATCTAATGG
AAAGCGCGCCTTTCTTGTCGATACATTGCAACTGGTGAGGGGTTTAGAAG
CGCAAGGCGTGCCATCGAAACAAGCGGAGGCAATAACAGCTGCAATTACT
GAAGTTCTAAACGACAGTTTGGAAAATGTAGCTCATACCTTCGTTTCTAA
GGGTGAAATGCAGAAAACTGAGATGATTCAAGAAGCAAATCTGTCAAAGT
TTAAATCTGAAGTGCAAAGTTCTCAGGAGCATCATTTTTCTATGTTGCAA
CGTGAAACTGAGAAGCTTCGAAGCGACATAGAGAAAATGCGCAGTGAACT
GAGGTATGAGATTGACAAGGTCACCGCAGGGCAGCGTTTGGACTTAAATC
TTGAAAGAGGGCGTATACGTGATGAGTTAGCAAACCAGAATGCAGAAACC
ACCAACCTCACTAATAAACTAGACAGAGAAATTCATGCACTAAGAGCTCA
CATGGAGGCAGCCAAATATGATGTAATCAAATACTGCATAGGTACCCTCG
TTTCCATATCTGCCGTTGGGCTCGCTATAGTCCGCATCTTGATGTAGTGT
TATCTACACTAAGGCATTTTATGTGACATTG
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