FC930804

Overview
NameFC930804
Unique NameFC930804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig175 contig Ccv1_Contig175:200..884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930804 vs. ExPASy Swiss-Prot
Match: TC753_ARATH (Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1)

HSP 1 Score: 403.29 bits (1035), Expect = 6.169e-112
Identity = 196/238 (82.35%), Postives = 212/238 (89.08%), Query Frame = 3
Query:    3 VYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNM-----ARS*DPDSCE------NTHVYAFVEHGH 683
            VYNPRNRTF+ SCFNSRKLSPVFTGGPGV+EVP IWVDRAG+KANITENFTRQSKFTYGLVMEEITTRDESSHI+ +GQR+LPSGGISADGPPTTLSGTG+DRMAFLQ NITRDNTKFVNGA+VG+R VFQVDQGLGIGSKFPFFNRHQLT+T+F QL++VE+GA K PPPVLVLHGHYGGCVGDLPSYDAF LGGPYSVRGYNM     AR+      E      NTHVYAFVEHG+
Sbjct:  524 VYNPRNRTFKTSCFNSRKLSPVFTGGPGVEEVPPIWVDRAGVKANITENFTRQSKFTYGLVMEEITTRDESSHIAANGQRLLPSGGISADGPPTTLSGTGVDRMAFLQANITRDNTKFVNGAVVGQRTVFQVDQGLGIGSKFPFFNRHQLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGDLPSYDAFVLGGPYSVRGYNMGELGAARNIAEVGAEIRIPVKNTHVYAFVEHGN 761          
BLAST of FC930804 vs. ExPASy Swiss-Prot
Match: TOC75_PEA (Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1)

HSP 1 Score: 384.415 bits (986), Expect = 2.965e-106
Identity = 190/237 (80.17%), Postives = 203/237 (85.65%), Query Frame = 3
Query:    3 VYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNM-----ARS*DPDSCE------NTHVYAFVEHG 680
            V NPRNRT R SCFNSRKLSPVFTGGPGVDEVP+IWVDRAG+KANITENF+RQSKFTYGLVMEEI TRDES+HI  +GQRVLP+G ISADGPPTTLSGTGIDRMAFLQ NITRDNT+FVNG IVG RN+FQVDQGLG+GS FPFFNRHQLT+T+F QL  VEEGA K PPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNM     AR+    + E       THVYAF EHG
Sbjct:  515 VDNPRNRTLRVSCFNSRKLSPVFTGGPGVDEVPSIWVDRAGVKANITENFSRQSKFTYGLVMEEIITRDESNHICSNGQRVLPNGAISADGPPTTLSGTGIDRMAFLQANITRDNTRFVNGTIVGSRNMFQVDQGLGVGSNFPFFNRHQLTVTKFLQLMSVEEGAGKSPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGEIGAARNILELAAEIRIPIKGTHVYAFAEHG 751          
BLAST of FC930804 vs. ExPASy Swiss-Prot
Match: TOC75_ORYSJ (Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2)

HSP 1 Score: 342.813 bits (878), Expect = 9.895e-94
Identity = 165/233 (70.82%), Postives = 186/233 (79.83%), Query Frame = 3
Query:   15 RNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMAR-----------S*DPDSCENTHVYAFVEHG 680
            +NRTF+ SCFN+RKLSPVF  GP +DE P +WVDR G KANITE+FTRQSKFTYGLV+EEITTRDE++ I  HG R +PSGG+S DGPPTTLSGTGIDRMAFLQ NITRDNT+FVNGA++G+R +FQ+DQGLGIGSK PFFNRHQLTLT+F  L + E+GA KP P VLVLHGHY GCVGDLPSYDAFTLGGPYSVRGY M             S       NT+VY FVEHG
Sbjct:  527 KNRTFKTSCFNTRKLSPVFVAGPNMDEAPPVWVDRVGFKANITESFTRQSKFTYGLVVEEITTRDETNSICTHGSRAMPSGGLSMDGPPTTLSGTGIDRMAFLQANITRDNTEFVNGAVIGDRCIFQLDQGLGIGSKNPFFNRHQLTLTKFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGMGELGASRNVLEVASELRIPVRNTYVYGFVEHG 759          
BLAST of FC930804 vs. ExPASy Swiss-Prot
Match: TC754_ARATH (Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 4.922e-85
Identity = 157/239 (65.69%), Postives = 182/239 (76.15%), Query Frame = 3
Query:    3 VYNPRNRTFRASCFNSRKLSPVFTGGPGVDE-VPAIWVDRAGLKANITENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMARS*DPDS-----------CENTHVYAFVEHGH 683
            V  PRNRTF+ S FNSRKLSPVFTGGPG ++ VP ++V R  LKA ITEN TRQ + TYG++ EEI TRDE+  IS +G  + P GGIS +GPPTTLSGTGID +A LQ NITRDNTK VNGA+VGE+N+FQVDQGLGIG+ FP FNRHQL+LT F QLKQVEEG++KP PPVLVLHG YGGC+GDLPSYD F LGGP SVRGY+M       +            +NTHVYAF EHG+
Sbjct:  101 VKKPRNRTFKTSFFNSRKLSPVFTGGPGYEDLVPPMFVGRDCLKATITENLTRQRELTYGVMFEEIITRDENRRISENGLLLSPDGGISINGPPTTLSGTGIDHIATLQANITRDNTKLVNGAVVGEKNIFQVDQGLGIGNNFPLFNRHQLSLTSFIQLKQVEEGSDKPQPPVLVLHGRYGGCIGDLPSYDVFALGGPNSVRGYSMGELGAAKNILELGAEIRIPVKNTHVYAFAEHGN 339          
The following BLAST results are available for this feature:
BLAST of FC930804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TC753_ARATH6.169e-11282.35Protein TOC75-3, chloroplastic OS=Arabidopsis thal... [more]
TOC75_PEA2.965e-10680.17Protein TOC75, chloroplastic OS=Pisum sativum GN=T... [more]
TOC75_ORYSJ9.895e-9470.82Protein TOC75, chloroplastic OS=Oryza sativa subsp... [more]
TC754_ARATH4.922e-8565.69Protein TOC75-4, chloroplastic OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC34109C01EF PostHarvP1 Citrus clementina cDNA clone C34109C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930804 ID=FC930804; Name=FC930804; organism=Citrus clementina; type=EST; length=685bp
GTGTTTATAATCCCCGTAACCGGACTTTCCGTGCCAGCTGCTTCAACAGT
CGGAAACTAAGTCCAGTCTTCACTGGTGGCCCAGGAGTGGATGAAGTCCC
TGCTATTTGGGTTGATCGAGCTGGACTAAAGGCTAATATCACAGAGAATT
TCACCCGTCAAAGCAAATTCACATATGGTCTTGTTATGGAAGAGATAACG
ACACGTGATGAAAGCAGCCACATATCTCCACATGGTCAAAGAGTGTTGCC
GAGTGGAGGAATTAGTGCAGATGGACCTCCAACCACCCTCAGTGGTACTG
GAATTGACCGAATGGCATTTCTACAGGGAAACATCACCCGTGACAACACC
AAGTTTGTTAATGGAGCTATAGTTGGTGAGAGGAATGTATTTCAGGTGGA
CCAAGGCCTTGGTATTGGCAGCAAGTTTCCGTTCTTTAATCGCCATCAAT
TGACGTTGACGCGATTTTTCCAATTGAAGCAAGTTGAAGAAGGTGCTAAT
AAACCACCACCTCCTGTTCTAGTACTTCATGGCCACTATGGAGGTTGCGT
TGGAGACCTACCAAGTTATGATGCATTTACACTTGGGGGTCCCTATTCAG
TTAGGGGTTACAATATGGCTAGGAGCTGAGATCCGGATTCCTGTGAAAAC
ACGCATGTGTATGCTTTTGTTGAGCATGGNCATGA
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