FC930818

Overview
NameFC930818
Unique NameFC930818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15373 contig Ccv1_Contig15373:85..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 372.859 bits (956), Expect = 8.772e-103
Identity = 180/203 (88.67%), Postives = 191/203 (94.09%), Query Frame = 2
Query:   65 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 673
            T   M FQKIKVANPIVEMDGDEMTR+ WK IKDKLIFPF+ELDIKYFDLGLP RD T+DKVTVESAEATLKYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPIICKN+PRLIPGWTKPICIGRHAFGDQYRATD+VI+GPGKLKLVFVPEG+ E T+LEVYNFTGEGGVAL+MYNTDESIR+FAEASM
Sbjct:   18 TTATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVELDIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFVPEGQGETTDLEVYNFTGEGGVALAMYNTDESIRSFAEASM 220          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.146e-102
Identity = 180/199 (90.45%), Postives = 187/199 (93.97%), Query Frame = 2
Query:   77 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 673
            M F KIKV NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYFDLGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVIQG GKLKLVFVPEG DEKTE EVYNFTG GGVALSMYNTDES+R+FAEASM
Sbjct:    1 MTFDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASM 199          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 3.333e-102
Identity = 179/199 (89.95%), Postives = 187/199 (93.97%), Query Frame = 2
Query:   77 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 673
            MAFQKI V NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYF LGLP+RDATDDKVTVESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL+PGWTKPICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG DEKTE EVYNFTG GGVALSMYNTDES+R+FAEASM
Sbjct:    1 MAFQKITVQNPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFSLGLPHRDATDDKVTVESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRLVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGVALSMYNTDESVRSFAEASM 199          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 366.696 bits (940), Expect = 6.287e-101
Identity = 176/198 (88.89%), Postives = 188/198 (94.95%), Query Frame = 2
Query:   80 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASM 673
            AFQKIKVANPIVEMDGDEMTRV WKSIKDKLI PFLELDIKY+DLGLP RD TDDKVT+ESAEATLKYNVAIKCATITPDEARVKEF LK MWKSPNGTIRNILNGTVFREPI+CKN+PRL+PGWTK ICIGRHAFGDQYRATDTVI+G GKLKLVFVPEG+ E+TE EV+NFTGEGGV+L+MYNTDESIR+FAEASM
Sbjct:    3 AFQKIKVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVTIESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNIPRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVFNFTGEGGVSLAMYNTDESIRSFAEASM 200          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHP_MACFA (Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.080e-76
Identity = 136/201 (67.66%), Postives = 162/201 (80.60%), Query Frame = 2
Query:   65 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEA 667
            T++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E EVYNF   GGV + MYNTDESI  FA +
Sbjct:   35 TRRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHS 234          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHP_PIG (Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.103e-76
Identity = 134/196 (68.37%), Postives = 160/196 (81.63%), Query Frame = 2
Query:   80 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEA 667
            A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF   GGV + MYNTDESI  FA +
Sbjct:    9 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVGMGMYNTDESISGFAHS 203          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHP_HUMAN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 4.103e-76
Identity = 135/200 (67.50%), Postives = 161/200 (80.50%), Query Frame = 2
Query:   68 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEA 667
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD TDD+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V    G  K+VF P+      E EVYNF   GGV + MYNTDESI  FA +
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDLGLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGVKEWEVYNFPA-GGVGMGMYNTDESISGFAHS 234          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHP_MOUSE (Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3)

HSP 1 Score: 283.493 bits (724), Expect = 6.999e-76
Identity = 134/200 (67.00%), Postives = 161/200 (80.50%), Query Frame = 2
Query:   68 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEA 667
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E EVYNF   GGV + MYNTDESI  FA +
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFPA-GGVGMGMYNTDESISGFAHS 234          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHP_BOVIN (Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 6.999e-76
Identity = 134/200 (67.00%), Postives = 162/200 (81.00%), Query Frame = 2
Query:   68 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEA 667
            ++  A ++IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      E EVYNF   GGV + MYNTDESI  FA +
Sbjct:   36 RRHYADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFPA-GGVGMGMYNTDESISGFAHS 234          
BLAST of FC930818 vs. ExPASy Swiss-Prot
Match: IDHP_RAT (Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 1.194e-75
Identity = 134/200 (67.00%), Postives = 161/200 (80.50%), Query Frame = 2
Query:   68 KKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEA 667
            ++  A ++IKV  P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PRL+PGWTKPI IGRHA GDQY+ATD V+   G  KLVF P+      E EVYNF   GGV + MYNTDESI  FA +
Sbjct:   36 RRHYAEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGMFKLVFTPKDGSGAKEWEVYNFPA-GGVGMGMYNTDESISGFAHS 234          
The following BLAST results are available for this feature:
BLAST of FC930818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHP_MEDSA8.772e-10388.67Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_TOBAC1.146e-10290.45Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU3.333e-10289.95Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHC_SOYBN6.287e-10188.89Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MACFA1.080e-7667.66Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_PIG4.103e-7668.37Isocitrate dehydrogenase [NADP], mitochondrial (Fr... [more]
IDHP_HUMAN4.103e-7667.50Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_MOUSE6.999e-7667.00Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_BOVIN6.999e-7667.00Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHP_RAT1.194e-7567.00Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34109D03EF PostHarvP1 Citrus clementina cDNA clone C34109D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930818 ID=FC930818; Name=FC930818; organism=Citrus clementina; type=EST; length=676bp
AACGACCTCGGCACCTCCGCTCTGCCCTATTATCTCTCTCTAGTTGTGAA
TCAACCGAAACTGAACAAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTC
GCCAATCCCATCGTCGAAATGGACGGAGATGAAATGACTCGAGTTTTCTG
GAAATCGATTAAGGATAAGCTTATTTTCCCTTTTCTGGAGTTGGACATAA
AGTACTTCGACCTTGGCCTTCCGAATCGTGATGCAACTGATGACAAAGTT
ACCGTTGAAAGTGCAGAAGCCACTCTCAAGTACAATGTAGCGATCAAGTG
TGCTACTATTACTCCAGATGAAGCTCGTGTCAAGGAATTTGTCTTGAAAC
AGATGTGGAAGAGTCCAAATGGGACAATCAGGAATATTTTGAATGGCACT
GTTTTCAGAGAACCAATCATTTGCAAAAATGTCCCTCGGCTTATTCCAGG
CTGGACAAAGCCCATATGCATTGGCAGGCATGCTTTTGGTGATCAATATC
GAGCAACTGATACAGTTATTCAAGGACCTGGCAAACTTAAATTGGTGTTT
GTACCAGAGGGAAAAGATGAGAAGACAGAGTTGGAGGTTTACAACTTTAC
GGGTGAGGGTGGAGTTGCATTGTCCATGTATAACACTGATGAGTCCATCC
GAGCTTTTGCTGAGGCTTCTATGACA
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