FC930827

Overview
NameFC930827
Unique NameFC930827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length424
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15222 contig Ccv1_Contig15222:1..424. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.848e-24
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 196
            MPSHK+FMIKKKL KKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL39_ORYSJ (60S ribosomal protein L39 OS=Oryza sativa subsp. japonica GN=RPL39 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.025e-23
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 196
            MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.025e-23
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 196
            MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL392_ARATH (60S ribosomal protein L39-2 OS=Arabidopsis thaliana GN=RPL39B PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.525e-22
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 2
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 196
            MPSHK+FMIKKKL KKMRQNRPIP+WIR+RTDN IRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51          
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL39_SPOFR (60S ribosomal protein L39 OS=Spodoptera frugiperda GN=RpL39 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.457e-19
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 2
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 190
            M +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL39_PLUXY (60S ribosomal protein L39 OS=Plutella xylostella GN=RpL39 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.457e-19
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 2
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 190
            M +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL39_RAT (60S ribosomal protein L39 OS=Rattus norvegicus GN=Rpl39 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.872e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 193
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL39_MOUSE (60S ribosomal protein L39 OS=Mus musculus GN=Rpl39 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.872e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 193
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL39_ICTPU (60S ribosomal protein L39 OS=Ictalurus punctatus GN=rpl39 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.872e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 193
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MASHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of FC930827 vs. ExPASy Swiss-Prot
Match: RL39_HUMAN (60S ribosomal protein L39 OS=Homo sapiens GN=RPL39 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.872e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   44 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 193
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
The following BLAST results are available for this feature:
BLAST of FC930827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL391_ARATH7.848e-2494.1260S ribosomal protein L39-1 OS=Arabidopsis thalian... [more]
RL39_ORYSJ1.025e-2396.0860S ribosomal protein L39 OS=Oryza sativa subsp. j... [more]
RL39_MAIZE1.025e-2396.0860S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=... [more]
RL392_ARATH2.525e-2290.2060S ribosomal protein L39-2 OS=Arabidopsis thalian... [more]
RL39_SPOFR4.457e-1981.6360S ribosomal protein L39 OS=Spodoptera frugiperda... [more]
RL39_PLUXY4.457e-1981.6360S ribosomal protein L39 OS=Plutella xylostella G... [more]
RL39_RAT1.872e-1778.0060S ribosomal protein L39 OS=Rattus norvegicus GN=... [more]
RL39_MOUSE1.872e-1778.0060S ribosomal protein L39 OS=Mus musculus GN=Rpl39... [more]
RL39_ICTPU1.872e-1778.0060S ribosomal protein L39 OS=Ictalurus punctatus G... [more]
RL39_HUMAN1.872e-1778.0060S ribosomal protein L39 OS=Homo sapiens GN=RPL39... [more]

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Properties
Property NameValue
Genbank descriptionC34109E01EF PostHarvP1 Citrus clementina cDNA clone C34109E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930827 ID=FC930827|Name=FC930827|organism=Citrus clementina|type=EST|length=424bp
GAACTAGGGTTTTCGCTGCTCCCGATCGAACTAAGAAGCGAAAATGCCGT
CACACAAGACATTTATGATCAAGAAGAAGCTTGCCAAGAAGATGAGGCAA
AACAGGCCCATCCCTCACTGGATCCGTATGCGCACCGACAACACCATCAG
ATACAACGCAAAGCGCAGGCACTGGCGCCGCACAAAGCTTGGATTCTAAG
GTGTTTAGGATCAGATGGATTTGTTGTTGAGTTTGTTTTAAGCTTATGTT
CGAGTAATTTAGACTATGATACCTGGCCTTATGTTTTATATTTAGTTTTG
AGAAACTCATTTGTATAAGGAACTCATTGAGAGTCCTTATTTTATTTTGT
GCCCTCTTGAGTTAATTTGGACTTATGAAATTTGACTTGTTTCGACCAAN
AAAAAAAAAAAAAAAAAAAAAAAA
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