FC930840

Overview
NameFC930840
Unique NameFC930840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9351 contig Ccv1_Contig9351:7..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_ARATH (Anthranilate phosphoribosyltransferase, chloroplastic OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.984e-55
Identity = 80/108 (74.07%), Postives = 88/108 (81.48%), Query Frame = 2 
Query:  353 LERAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            L RAM+K+A KVEGL DAVDIVGTGGDGANTVNISTG+SILAAACGAKVAKQ            DVLEALGVV+DL PEG++RCV+E GIGFMMS  YHPAMK+V PV
Sbjct:  162 LARAMMKHARKVEGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVVLDLGPEGIKRCVEEGGIGFMMSPMYHPAMKIVGPV 269

HSP 2 Score: 78.9518 bits (193), Expect = 3.984e-55
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:  148 TAIQTPQPAVSDNTRPLTPCFNELIDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGETFGE 360
            +A +   PA ++ +      FN+LI+ LI RVDL+E EA++SL++LLNEA+EALISAFLVLLRAKGET+ E
Sbjct:   88 SAAEALPPACANASPSSIKSFNQLIETLIDRVDLSETEAESSLEFLLNEANEALISAFLVLLRAKGETYEE 158
[Close]
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_ACIC1 (Anthranilate phosphoribosyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=trpD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.051e-28
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 2 
Query:  353 LERAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            L   M+  A  V  +G+A+DIVG+GGD A+TVNIST A+I+AAA G  VAK             D+LEALGV IDLD  GV RC++ AGIGF  +  +HP+++
Sbjct:   63 LSSVMLALAAPVPPIGEALDIVGSGGDRAHTVNISTMAAIVAAATGVVVAKHGNRAASSACGSADLLEALGVAIDLDGAGVARCIERAGIGFCFAPVFHPSLR 165

HSP 2 Score: 46.9802 bits (110), Expect = 4.051e-28
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  199 TPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            TP + E++  L++R DLTEAEA  ++  +++ EA +A I+AF V LRAKGE+  E
Sbjct:    5 TPSWPEVLSALLARRDLTEAEAAWAMHQIMSGEATDAQIAAFAVALRAKGESAEE 59
[Close]
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_CHLAD (Anthranilate phosphoribosyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=trpD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.745e-25
Identity = 53/104 (50.96%), Postives = 64/104 (61.54%), Query Frame = 2 
Query:  365 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            M + AT V   G  +D  GTGGDGA+T NIST A+ +AA  G  VAK             DVLE LGV I+LD EGV RC+ +AGIGFM + K+HPAM+   PV
Sbjct:   62 MREKATHVYFDGPVIDTCGTGGDGAHTFNISTTAAFVAAGAGLTVAKHGNRAMSSVCGSADVLEGLGVQIELDAEGVARCLRDAGIGFMFAPKFHPAMRFAGPV 165

HSP 2 Score: 38.5058 bits (88), Expect = 1.745e-25
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:  214 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            E I  +++R DLT+AEA + ++ ++N  A  A I+AFL  L  KGET  E
Sbjct:    5 EAIAAVVARRDLTQAEAASVMEEIMNGTATPAQIAAFLTALHIKGETDAE 54
[Close]
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_CHLCV (Anthranilate phosphoribosyltransferase OS=Chlamydophila caviae GN=trpD PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.271e-25
Identity = 55/105 (52.38%), Postives = 69/105 (65.71%), Query Frame = 2 
Query:  362 AMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            A+ K AT V     A+DIVGTGGD ANTVNISTG++ILAAACG  +AK             DVLEALG+ I++ PE +  CV E GIGFM +  YHP++K + P+
Sbjct:   59 ALQKQATPVNLPFPALDIVGTGGDLANTVNISTGSAILAAACGIPIAKHGNRSVSSQSGSADVLEALGIEIEMSPEELLSCVQEVGIGFMFAPIYHPSLKKLAPI 163

HSP 2 Score: 31.5722 bits (70), Expect = 2.271e-25
Identity = 15/44 (34.09%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:  220 IDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGET 351
            +  ++++  LT  E ++  + +LN AD   I+AFL +L+ +GET
Sbjct:    6 LQSIMNQSHLTYDEVESVTNLMLNGADPHQIAAFLAVLKYRGET 49
[Close]
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_CHLFF (Anthranilate phosphoribosyltransferase OS=Chlamydophila felis (strain Fe/C-56) GN=trpD PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.955e-25
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 2 
Query:  362 AMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            A+ K AT V+    A+DIVGTGGD ANTVNISTG++IL+AACG  +AK             DVLEALG+ I++ PE +  C+ E GIGFM +  YHP++K + P+
Sbjct:   59 ALQKQATSVDLPFPALDIVGTGGDLANTVNISTGSAILSAACGIPIAKHGNRSVSSQSGSADVLEALGIEIEMTPEELLSCIQEVGIGFMFAPIYHPSLKKLAPI 163

HSP 2 Score: 31.9574 bits (71), Expect = 2.955e-25
Identity = 15/44 (34.09%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:  220 IDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGET 351
            +  ++++  LT  EA++  + +LN +D   I+AFL +L+ +GET
Sbjct:    6 LQSIMNQSHLTYDEAESVTNLMLNGSDPHQIAAFLAVLKYRGET 49
[Close]
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_CHLSY (Anthranilate phosphoribosyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=trpD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.847e-25
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 2 
Query:  365 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            M + AT V   G  +D  GTGGDGA+T NIST A+ +AA  G  VAK             DVLE LGV I+LD EGV RC+ EAGIGFM + K+HPAM+   PV
Sbjct:   62 MREKATHVYFDGPVIDTCGTGGDGAHTFNISTTAAFVAAGAGLTVAKHGNRAMSSVCGSADVLEGLGVQIELDAEGVARCLREAGIGFMFAPKFHPAMRFAGPV 165

HSP 2 Score: 36.1946 bits (82), Expect = 3.847e-25
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  214 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            E I  +++R DLT+AEA + ++ +++  A  A I AFL  L  KGET  E
Sbjct:    5 EAIAAVVARRDLTQAEAASVMEEIMSGTATPAQIGAFLTALHMKGETDAE 54
[Close]
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_CHLAA (Anthranilate phosphoribosyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trpD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.847e-25
Identity = 54/104 (51.92%), Postives = 64/104 (61.54%), Query Frame = 2 
Query:  365 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            M + AT V   G  +D  GTGGDGA+T NIST A+ +AA  G  VAK             DVLE LGV I+LD EGV RC+ EAGIGFM + K+HPAM+   PV
Sbjct:   62 MREKATHVYFDGPVIDTCGTGGDGAHTFNISTTAAFVAAGAGLTVAKHGNRAMSSVCGSADVLEGLGVQIELDAEGVARCLREAGIGFMFAPKFHPAMRFAGPV 165

HSP 2 Score: 36.1946 bits (82), Expect = 3.847e-25
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  214 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            E I  +++R DLT+AEA + ++ +++  A  A I AFL  L  KGET  E
Sbjct:    5 EAIAAVVARRDLTQAEAASVMEEIMSGTATPAQIGAFLTALHMKGETDAE 54
[Close]
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_SACEN (Anthranilate phosphoribosyltransferase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=trpD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.164e-24
Identity = 53/100 (53.00%), Postives = 65/100 (65.00%), Query Frame = 2 
Query:  362 AMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMK 661
            AM+ ++  +E    AVDIVGTGGD + +VNIST ASI+ AA G  V K             DVLEALGV IDL PEGVRRCV++ GIGF  +  +HPAM+
Sbjct:   66 AMLSHSRPLEIRRRAVDIVGTGGDRSGSVNISTMASIVVAAAGVPVVKHGNRAASSKCGTADVLEALGVAIDLPPEGVRRCVEDLGIGFCFAPVFHPAMR 165

HSP 2 Score: 32.7278 bits (73), Expect = 3.164e-24
Identity = 19/49 (38.78%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:  217 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            L+  L++  DL+  +   ++D ++  EA  A ++AF+V LRAKGET  E
Sbjct:   11 LLGHLVAGNDLSAEDTAWAMDLVMTGEATPARVAAFVVALRAKGETPAE 59
[Close]
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_SYMTH (Anthranilate phosphoribosyltransferase OS=Symbiobacterium thermophilum GN=trpD PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.139e-22
Identity = 45/90 (50.00%), Postives = 55/90 (61.11%), Query Frame = 2 
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            VD  GTGGDG++T NIST A+ + A  G  VAK             DVLEALG+ +DL PE V RC+DE GIGF+ +   H +MK V PV
Sbjct:   75 VDTCGTGGDGSHTFNISTTAAFVVAGAGVAVAKHGNRAATSLTGSADVLEALGIHLDLTPEEVGRCIDEVGIGFLYAPALHTSMKHVAPV 164

HSP 2 Score: 38.891 bits (89), Expect = 2.139e-22
Identity = 20/40 (50.00%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:  244 DLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGE 360
            DLTEA+A+A++  ++  EA  A ++AFL+ LR KGET  E
Sbjct:   13 DLTEAQAEAAMTLMMTGEATPAQVAAFLMALRIKGETVAE 52
[Close]
BLAST of FC930840 vs. ExPASy Swiss-Prot
Match: TRPD_METAC (Anthranilate phosphoribosyltransferase OS=Methanosarcina acetivorans GN=trpD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.614e-22
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 2 
Query:  407 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKVVRPV 676
            +D  GTGGDG NT+N+ST A+I+ AA G  VAK             DVLEALG+ +DL P  VR+ +++ GIGFM +  +HPAMK V  V
Sbjct:   78 IDTCGTGGDGLNTINVSTAAAIVTAAAGVPVAKHGNRAATSMSGSSDVLEALGIKVDLTPGQVRKTIEKIGIGFMFAPVFHPAMKRVAGV 167

HSP 2 Score: 36.5798 bits (83), Expect = 3.614e-22
Identity = 20/45 (44.44%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:  214 ELIDCLISRVDLTEAEAQASLDYLLNEADEALISAFLVLLRAKGE 348
            E I  L    DL+  EA+A++  +L+ A++  I AFL+ LRAKGE
Sbjct:    6 EYIKKLEEGSDLSSEEAEAAIGEILSTAEDEEIGAFLLALRAKGE 50
The following BLAST results are available for this feature:
BLAST of FC930840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_ARATH3.984e-5574.07Anthranilate phosphoribosyltransferase, chloroplas... [more]
TRPD_ACIC14.051e-2849.51Anthranilate phosphoribosyltransferase OS=Acidothe... [more]
TRPD_CHLAD1.745e-2550.96Anthranilate phosphoribosyltransferase OS=Chlorofl... [more]
TRPD_CHLCV2.271e-2552.38Anthranilate phosphoribosyltransferase OS=Chlamydo... [more]
TRPD_CHLFF2.955e-2550.48Anthranilate phosphoribosyltransferase OS=Chlamydo... [more]
TRPD_CHLSY3.847e-2551.92Anthranilate phosphoribosyltransferase OS=Chlorofl... [more]
TRPD_CHLAA3.847e-2551.92Anthranilate phosphoribosyltransferase OS=Chlorofl... [more]
TRPD_SACEN3.164e-2453.00Anthranilate phosphoribosyltransferase OS=Saccharo... [more]
TRPD_SYMTH2.139e-2250.00Anthranilate phosphoribosyltransferase OS=Symbioba... [more]
TRPD_METAC3.614e-2248.89Anthranilate phosphoribosyltransferase OS=Methanos... [more]

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Properties
Property NameValue
Genbank descriptionC34109F02EF PostHarvP1 Citrus clementina cDNA clone C34109F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930840 ID=FC930840; Name=FC930840; organism=Citrus clementina; type=EST; length=676bp
AAAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCTCTCC
ATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTTCGAA
ACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATTAACT
GCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTCTAAC
GCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGATTTAA
CGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGCTGAT
GAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAGAAAC
ATTTGGAGAGGGCGATGATAAAGTATGCTACGAAGGTGGAAGGGCTGGGT
GATGCAGTTGACATTGTGGGTACAGGAGGTGATGGTGCAAACACAGTGAA
CATTTCAACTGGTGCTTCAATTCTTGCTGCAGCTTGTGGTGCAAAAGTTG
CCAAGCAAGGGAGTCGGTCTAGTTCTTCTGCATGTGGAAGTGCTGATGTG
TTAGAAGCTTTGGGTGTCGTTATTGACTTGGACCCAGAGGGTGTAAGAAG
GTGTGTGGATGAGGCAGGAATTGGTTTCATGATGTCGACNAAGTATCACC
CTGCAATGAAAGTTGTCAGGCCAGTG
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