FC930848

Overview
NameFC930848
Unique NameFC930848
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930848_ssr209 microsatellite FC930848_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC930848 vs. ExPASy Swiss-Prot
Match: AB25B_ARATH (ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.047e-16
Identity = 42/57 (73.68%), Postives = 46/57 (80.70%), Query Frame = 1
Query:  418 TKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFK 588
            T S+  +  +ADMKI RTLA YLWM+DN EFR RVI ALGFLV AKVLNVQVPFLFK
Sbjct:  109 TTSSDSDSAMADMKILRTLAGYLWMRDNPEFRFRVIAALGFLVGAKVLNVQVPFLFK 165          

HSP 2 Score: 20.4014 bits (41), Expect = 5.047e-16
Identity = 8/14 (57.14%), Postives = 9/14 (64.29%), Query Frame = 2
Query:  662 FLAPSCRFIGYGIA 703
            F  P+   IGYGIA
Sbjct:  195 FATPAAVLIGYGIA 208          
BLAST of FC930848 vs. ExPASy Swiss-Prot
Match: AB23B_ARATH (ABC transporter B family member 23, mitochondrial OS=Arabidopsis thaliana GN=ABCB23 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.298e-12
Identity = 49/130 (37.69%), Postives = 61/130 (46.92%), Query Frame = 1
Query:  199 LSYNHHHHEFSTFNFGNKFNSVSLSSRSRGRTYPWNRLSPITSFLSDXXXXXXXXXXXXXXXKDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFK 588
            L  +HHHH FS+F        +  SS  R           I +F +D                      N+  TK+ + +      KI RT++SYLWMKDN E R RVI AL  L+ AK LNVQVPFLFK
Sbjct:   18 LRSDHHHHSFSSF--------IKRSSIQRSPA--------INAFFTDPSPSPSPVNARVFFFSTSTSTPNQDQTKTASSK------KILRTISSYLWMKDNPELRFRVIAALACLIGAKFLNVQVPFLFK 125          

HSP 2 Score: 21.1718 bits (43), Expect = 1.298e-12
Identity = 9/14 (64.29%), Postives = 9/14 (64.29%), Query Frame = 2
Query:  662 FLAPSCRFIGYGIA 703
            F  PS   IGYGIA
Sbjct:  150 FATPSSVLIGYGIA 163          
The following BLAST results are available for this feature:
BLAST of FC930848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AB25B_ARATH5.047e-1673.68ABC transporter B family member 25, mitochondrial ... [more]
AB23B_ARATH1.298e-1237.69ABC transporter B family member 23, mitochondrial ... [more]
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Properties
Property NameValue
Genbank descriptionC34109F10EF PostHarvP1 Citrus clementina cDNA clone C34109F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930848 ID=FC930848; Name=FC930848; organism=Citrus clementina; type=EST; length=708bp
GGCAAGCAGTGAACAAAAACCAGGACCAGGAGTTATGGTCTCTCTTTGAA
TTTGAAGTATTAGGGTTTATGAACTCGATTGGCAATTGGATTCTTACGAT
TAGATTGGGGGTTCACAGAATAGAGAGATAAAAAAAAAAAAATGATTGGC
GGTGCCTCTACTTGGAGGTGCTTGAGAGTTCGTCAGCTGACCCGCATTTT
GTCTTACAATCATCATCATCATGAATTCAGCACCTTCAATTTTGGGAACA
AGTTCAATTCAGTTTCATTATCAAGCAGAAGCAGAGGAAGAACATACCCA
TGGAATCGCCTTTCTCCCATCACCTCTTTCCTTTCAGATTCTGCCTCTTC
AAGAAGCATTTTGTTCTCAACATCAACTTCTACCAAAGATAAAAAGGATT
TCCTGAATAAACCAGTTACTAAAAGCAATGCCCCAGAGCAGCAAATTGCT
GACATGAAGATATTTCGAACTCTTGCCAGTTATTTGTGGATGAAAGACAA
CTTTGAGTTCCGTTTGAGGGTCATTACTGCTTTGGGTTTTCTTGTTGCTG
CTAAGGTTTTGAATGTTCAAGTTCCGTTCCTTTTCAAGCTTGCTGTTGAT
TGGCTAACAACTGCAACCACCACTGCCACAGCTCTTGCGGCTAATTCCAC
CTTCTTAGCTCTTTTTGGCACCCAGCTGCCGTTTTATTGGCTATGGAATT
GCCGTACT
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