FC930853

Overview
NameFC930853
Unique NameFC930853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930853_ssr12 microsatellite FC930853_ssr12:12..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15225 contig Ccv1_Contig15225:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930853 vs. ExPASy Swiss-Prot
Match: AK2_ARATH (Aspartokinase 2, chloroplastic OS=Arabidopsis thaliana GN=AK2 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.623e-30
Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 2 
Query:  413 GLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVT 682
            GLRVSCE  R+D+++RK+ E      + K+LTCVMKFGGSS+ SAERM+EVA LILSFP+ERPVIVLSAMGKTTNKLL AGEKAV+CGVT
Sbjct:   52 GLRVSCEALRVDLLQRKEPETCDSSGTGKELTCVMKFGGSSVESAERMKEVANLILSFPDERPVIVLSAMGKTTNKLLKAGEKAVTCGVT 141
[Close]
BLAST of FC930853 vs. ExPASy Swiss-Prot
Match: AK3_ARATH (Aspartokinase 3, chloroplastic OS=Arabidopsis thaliana GN=AK3 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.616e-30
Identity = 63/89 (70.79%), Postives = 80/89 (89.89%), Query Frame = 2 
Query:  416 LRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVT 682
            LRV+CE  R++++ERK SE   ++++EK+LTCVMKFGGSS+ASAERM +VA+LILSFP+E+PV+VLSAM KTTNKLL+AGEKAV CGVT
Sbjct:   54 LRVTCEAGRVELLERKASETFKLNKTEKKLTCVMKFGGSSVASAERMIQVAKLILSFPDEKPVVVLSAMAKTTNKLLMAGEKAVCCGVT 142
[Close]
BLAST of FC930853 vs. ExPASy Swiss-Prot
Match: AK1_ARATH (Aspartokinase 1, chloroplastic OS=Arabidopsis thaliana GN=AK1 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.738e-24
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 2 
Query:  449 VIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVT 682
            V+E KK+E +  +  EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP E PVIVLSAMGKTTN LLLAGEKAVSCGV+
Sbjct:   69 VLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCGVS 145
The following BLAST results are available for this feature:
BLAST of FC930853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AK2_ARATH1.623e-3073.33Aspartokinase 2, chloroplastic OS=Arabidopsis thal... [more]
AK3_ARATH3.616e-3070.79Aspartokinase 3, chloroplastic OS=Arabidopsis thal... [more]
AK1_ARATH1.738e-2474.36Aspartokinase 1, chloroplastic OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionC34109G04EF PostHarvP1 Citrus clementina cDNA clone C34109G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930853 ID=FC930853; Name=FC930853; organism=Citrus clementina; type=EST; length=699bp
GATTGTTCGCACGCCCGCCCGCCCGCATTTTTCTTACGCGTCCGAAACTT
TCGTCCTAAGTAAAAAGGAAAAAAGGAAAACGAGCTTCGGATTTATTATT
TTTAATTTGTTGAATATTTTGTGCTGCATTTCGTTAACATTGGGATTCGG
AGCTCGGTCTTGAAGATCGAGCTCCTATAAGTTGAAGCCTTAATTCGTTT
GCTGCTATTTGTCGACATAACCTCTTATATTTGCAATTTTTTTTAACATT
ATTAATTATAGGATGGCGAACACAATGCAATTTTCTAGTATTATTCAAAA
GAATTCATTGCATTGCCAAGCGTTGTCATGGCAGCGGTTTGCGTTTGCCA
AATGTGTGAGTTCTAGTTCTAGATTATGTGTTAGCGTGAGGAATTCGTGT
GGAGGTAGAGGAGGATTGAGAGTTAGCTGTGAGGGAGCGAGAATCGATGT
GATTGAGAGGAAAAAGAGTGAGAATCTAGGTGTCGATGAGAGTGAGAAAC
AGTTGACGTGTGTAATGAAGTTTGGTGGATCGTCCTTGGCCTCTGCCGAG
AGGATGAGAGAGGTTGCTGAGCTTATACTTAGCTTCCCTAATGAGAGGCC
CGTGATTGTTCTCTCTGCGATGGGAAAGACAACAAATAAGCTTTTATTGG
CCGGTGAGAAGGCTGTCAGTTGTGGTGTCACTATATATCATGTATTGAT
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