FC930856

Overview
NameFC930856
Unique NameFC930856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10289 contig Ccv1_Contig10289:21..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930856 vs. ExPASy Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.363e-76
Identity = 137/204 (67.16%), Postives = 170/204 (83.33%), Query Frame = 1
Query:   58 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQSGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVXTV 669
            M+RPQDP R FFPFGNPF+ +S K S LS KL+ LL +FE  LA  + KL+PK+K DIL +SWM+ AMESLCETHN IK LIT+LELPVSDW++KW+DVYLDISV LLD+C AFSS LT+++QGHLLLQ  LH L+++SP    +A SSLD+W++HI SKNPR+E+CR+IL +LV +L+LPKVKNSAKGKVLMRA+YGVKV T+
Sbjct:    1 MARPQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILTVSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNLPKVKNSAKGKVLMRALYGVKVKTL 204          
BLAST of FC930856 vs. ExPASy Swiss-Prot
Match: U496D_ORYSI (UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.032e-55
Identity = 116/208 (55.77%), Postives = 142/208 (68.27%), Query Frame = 1
Query:   58 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSS--PTQS--GRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVXTV 669
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S S  P+Q    RA  SL  W E +  + PR+ SC + L  L  +L L KVKNS KGKVLMRA+YG++  TV
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCPRLVSCSATLQELAGNLSLMKVKNSVKGKVLMRALYGIESVTV 208          
BLAST of FC930856 vs. ExPASy Swiss-Prot
Match: U496D_ORYSJ (UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.003e-55
Identity = 116/208 (55.77%), Postives = 142/208 (68.27%), Query Frame = 1
Query:   58 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSS--PTQS--GRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVXTV 669
            MSR     R FFP GNPFR+M P G+ LS KL  LLA +E+ LA  LRKL P+   D+L LSWMRLA++ L E H  I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L+++ QG LLLQ  LH L S S  P+Q    RA  SL  W E +  +  R+ SC + L  L  +L L KVKNSAKGKVLMRA+YG++  TV
Sbjct:    1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLTLSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCARLVSCSATLQELAGNLSLMKVKNSAKGKVLMRALYGIESVTV 208          
The following BLAST results are available for this feature:
BLAST of FC930856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BPS1_ARATH2.363e-7667.16Protein BPS1, chloroplastic OS=Arabidopsis thalian... [more]
U496D_ORYSI1.032e-5555.77UPF0496 protein 4 OS=Oryza sativa subsp. indica GN... [more]
U496D_ORYSJ3.003e-5555.77UPF0496 protein 4 OS=Oryza sativa subsp. japonica ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34109G07EF PostHarvP1 Citrus clementina cDNA clone C34109G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930856 ID=FC930856; Name=FC930856; organism=Citrus clementina; type=EST; length=669bp
GACGCGTCTGCGAAATTTCCTAAGATTTTCGAGTACAGATTTCGCAAATC
CATCAAAATGAGTCGCCCCCAGGATCCACACCGTCCTTTCTTCCCATTTG
GAAATCCTTTTCGGATGATGTCCCCCAAAGGTTCTCGTTTGTCTCCCAAG
CTTGTATCTCTGTTGGCTGATTTTGAGGAGACCTTGGCAGAGAGGCTGAG
AAAACTTATGCCGAAAGACAAGGATGATATCCTCAACTTATCATGGATGA
GACTGGCAATGGAGTCACTTTGTGAGACTCACAATGTCATAAAAGACCTT
ATAACTGAGTTGGAGCTTCCTGTAAGTGACTGGGATGAGAAATGGATAGA
CGTGTACTTAGACATCAGTGTAAACTTGCTTGATATATGCATTGCTTTTA
GCTCTGTTCTCACGAAGGTCAGCCAAGGCCACCTATTGCTTCAGTGTGTC
TTGCACACTTTGGATTCTTCCTCTCCAACACAGTCTGGGCGAGCCTGTTC
TTCTCTTGATAACTGGAGGGAGCACATTAGTTCAAAGAACCCCAGAGTTG
AGAGCTGTCGTTCAATCTTAGACAATCTGGTAGCTTCTTTGGATTTGCCC
AAGGTTAAGAACTCAGCCAAAGGGAAGGTTTTGATGCGCGCAATGTATGG
GGTTAAGGTGNTGACTGTA
back to top