FC930859

Overview
NameFC930859
Unique NameFC930859
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3361 contig Ccv1_Contig3361:44..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930859 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 6.720e-109
Identity = 189/210 (90.00%), Postives = 202/210 (96.19%), Query Frame = 3
Query:   72 MSNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDV 701
            M+NQAESSD+KGTK+DFSTAILE+KKA NRLVVDEAINDDNSVV LHPDTMEKLQ FRGDTILIKGKKRKDTVCIALAD+TC+EPKIRMNKVVRSNLRVRLGDV+SVHQC DVKYG RVHILP+DDTIEGV+GN+FDAYLKPYF EAYRPVRKGDLFLVRGGMRS+EFKVIETDP EYCVVAPDTEIFCEGEP++REDE RLDEVGYDDV
Sbjct:    1 MANQAESSDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHILPLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKREDEERLDEVGYDDV 210          
BLAST of FC930859 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 391.734 bits (1005), Expect = 1.955e-108
Identity = 193/210 (91.90%), Postives = 201/210 (95.71%), Query Frame = 3
Query:   72 MSNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDV 701
            MSN+ ESSD+K TK+DFSTAILERKK+PNRLVVDEAINDDNSVV LHP TMEKLQ FRGDTILIKGKKRKDTVCIALAD+TCEEPKIRMNKVVRSNLRVRLGDV+SVHQC DVKYGKRVHILPVDDT+EGVTGNLFDAYLKPYF EAYRPVRKGDLFLVRGGMRSVEFKVIETDP EYCVVAPDTEIFCEGEPV+REDE RLDEVGYDDV
Sbjct:    1 MSNEPESSDSK-TKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDV 209          
BLAST of FC930859 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 4.816e-107
Identity = 191/210 (90.95%), Postives = 200/210 (95.24%), Query Frame = 3
Query:   72 MSNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDV 701
            MS  AESSD+K +K+DFSTAILERKK+PNRLVVDEAINDDNSVV LHP TMEKLQ FRGDTILIKGKKRKDTVCIALAD+TCEEPKIRMNKVVRSNLRVRLGDV+SVHQC DVKYGKRVHILPVDDT+EGVTGNLFDAYLKPYF EAYRPVRKGDLFLVRGGMRSVEFKVIETDP EYCVVAPDTEIFCEGEPV+REDE RLD+VGYDDV
Sbjct:    1 MSTPAESSDSK-SKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHILPVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKREDEERLDDVGYDDV 209          
BLAST of FC930859 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 386.726 bits (992), Expect = 6.290e-107
Identity = 186/210 (88.57%), Postives = 197/210 (93.81%), Query Frame = 3
Query:   72 MSNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDV 701
            MS Q ESSD K  K+DFSTAILERKK+PNRLVVDEA+NDDNSVV +HP TMEKLQ FRGDTILIKGKKRKDT+CIALAD+ CEEPKIRMNKVVRSNLRVRLGDVVSVHQC DVKYGKRVHILP+DDTIEGVTGNLFDA+LKPYF EAYRPVRKGDLFLVRGGMRSVEFKV+ETDP EYCVVAPDTEIFCEGEP++REDE RLDEVGYDDV
Sbjct:    1 MSQQGESSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRGDTILIKGKKRKDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVVETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDV 210          
BLAST of FC930859 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 1.311e-104
Identity = 185/210 (88.10%), Postives = 198/210 (94.29%), Query Frame = 3
Query:   72 MSNQAESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENRLDEVGYDDV 701
            M++QAESSD+K  K+DFSTAILERKKA NRLVVDEA+NDDNSVV LHP TMEKLQ FRGDTILIKGKKRKDTV IALAD+TC+EPKIRMNKVVRSNLRVRLGDVVSVHQC DVKYGKRVHILP+DDTIEG+TG+LFDA+LKPYF EAYRP+RKGD FLVRGGMRSVEFKVIETDP EYCVVAPDTEIFCEGEPV+REDE RLDEVGYDDV
Sbjct:    1 MTDQAESSDSKNAKKDFSTAILERKKAANRLVVDEAVNDDNSVVALHPATMEKLQLFRGDTILIKGKKRKDTVVIALADETCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGLTGDLFDAFLKPYFLEAYRPLRKGDNFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVKREDEERLDEVGYDDV 210          
BLAST of FC930859 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 311.997 bits (798), Expect = 1.969e-84
Identity = 144/207 (69.57%), Postives = 177/207 (85.51%), Query Frame = 3
Query:   84 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGYDDV 701
            A  +D+KG   D STAIL++K  PNRL+VDEAIN+DNSVV L    M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+  C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP++REDE   L+EVGYDD+
Sbjct:    2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDI 206          
BLAST of FC930859 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 311.997 bits (798), Expect = 1.969e-84
Identity = 144/207 (69.57%), Postives = 177/207 (85.51%), Query Frame = 3
Query:   84 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGYDDV 701
            A  +D+KG   D STAIL++K  PNRL+VDEAIN+DNSVV L    M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+  C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP++REDE   L+EVGYDD+
Sbjct:    2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDI 206          
BLAST of FC930859 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 311.997 bits (798), Expect = 1.969e-84
Identity = 144/207 (69.57%), Postives = 177/207 (85.51%), Query Frame = 3
Query:   84 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGYDDV 701
            A  +D+KG   D STAIL++K  PNRL+VDEAIN+DNSVV L    M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRVRLGDV+S+  C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP++REDE   L+EVGYDD+
Sbjct:    2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDI 206          
BLAST of FC930859 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 310.071 bits (793), Expect = 7.482e-84
Identity = 143/207 (69.08%), Postives = 176/207 (85.02%), Query Frame = 3
Query:   84 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGYDDV 701
            A  +D+KG   D STAIL++K  PNRL+VDEAIN+DNSVV L    M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRV LGDV+S+  C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP++REDE   L+EVGYDD+
Sbjct:    2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDI 206          
BLAST of FC930859 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 7.482e-84
Identity = 143/207 (69.08%), Postives = 176/207 (85.02%), Query Frame = 3
Query:   84 AESSDAKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVVLHPDTMEKLQFFRGDTILIKGKKRKDTVCIALADDTCEEPKIRMNKVVRSNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCVVAPDTEIFCEGEPVRREDENR-LDEVGYDDV 701
            A  +D+KG   D STAIL++K  PNRL+VDEAIN+DNSVV L    M++LQ FRGDT+L+KGKKR++ VCI L+DDTC + KIRMN+VVR+NLRV LGDV+S+  C DVKYGKR+H+LP+DDT+EG+TGNLF+ YLKPYF EAYRP+RKGD+FLVRGGMR+VEFKV+ETDP  YC+VAPDT I CEGEP++REDE   L+EVGYDD+
Sbjct:    2 ASGADSKGD--DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVHLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDI 206          
The following BLAST results are available for this feature:
BLAST of FC930859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
CD48D_ARATH6.720e-10990.00Cell division control protein 48 homolog D OS=Arab... [more]
CD48E_ARATH1.955e-10891.90Cell division control protein 48 homolog E OS=Arab... [more]
CD48A_ARATH4.816e-10790.95Cell division control protein 48 homolog A OS=Arab... [more]
CDC48_SOYBN6.290e-10788.57Cell division cycle protein 48 homolog OS=Glycine ... [more]
CDC48_CAPAN1.311e-10488.10Cell division cycle protein 48 homolog OS=Capsicum... [more]
TERA_RAT1.969e-8469.57Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_MOUSE1.969e-8469.57Transitional endoplasmic reticulum ATPase OS=Mus m... [more]
TERA_HUMAN1.969e-8469.57Transitional endoplasmic reticulum ATPase OS=Homo ... [more]
TERA_PIG7.482e-8469.08Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_BOVIN7.482e-8469.08Transitional endoplasmic reticulum ATPase OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionC34109G10EF PostHarvP1 Citrus clementina cDNA clone C34109G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930859 ID=FC930859; Name=FC930859; organism=Citrus clementina; type=EST; length=701bp
GATCCACAAAATTCTGTTTTCTCAATTCCTCTAATCACTTTCGTTATCTC
ATTCTCTTCAATCAACTAATTATGTCTAATCAAGCTGAATCCTCTGATGC
TAAGGGGACGAAGAGGGACTTTAGTACGGCCATTTTGGAGCGAAAGAAGG
CACCGAATCGTCTCGTTGTTGATGAAGCTATTAACGATGATAACTCTGTC
GTTGTTCTTCATCCCGATACCATGGAGAAGCTCCAATTCTTCCGCGGTGA
CACGATCCTCATCAAGGGAAAGAAAAGGAAAGATACCGTTTGTATTGCCC
TTGCCGACGATACATGTGAGGAACCGAAGATAAGAATGAATAAGGTCGTG
AGGTCGAACTTGAGGGTTAGACTCGGAGATGTTGTTTCTGTGCACCAGTG
CGCTGATGTCAAATACGGAAAGCGTGTGCACATATTACCTGTGGATGACA
CAATTGAAGGGGTTACTGGAAATCTCTTTGATGCATACTTGAAACCTTAT
TTCACGGAAGCTTATCGACCAGTGAGGAAGGGTGATCTATTCCTTGTTAG
AGGTGGAATGAGAAGTGTAGAGTTCAAGGTTATTGAGACTGACCCTCCTG
AATACTGTGTGGTTGCCCCTGATACTGAGATCTTCTGTGAGGGAGAGCCA
GTGAGAAGGGAAGATGAGAATCGATTAGATGAGGTTGGCTATGATGATGT
T
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