FC930861

Overview
NameFC930861
Unique NameFC930861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930861_ssr119 microsatellite FC930861_ssr119:119..139. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930861_ssr140 microsatellite FC930861_ssr140:140..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC930861 vs. ExPASy Swiss-Prot
Match: RR30_SPIOL (30S ribosomal protein 1, chloroplastic OS=Spinacia oleracea GN=RPS30 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 5.080e-52
Identity = 97/123 (78.86%), Postives = 114/123 (92.68%), Query Frame = 2
Query:  284 KPLPVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 652
            KP  V MSWDGPLSSVKLI+QG+NLE++D V++HVE+KVGK+V KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLRKIK+K SDHGRHM
Sbjct:   60 KPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLRKIKDKVSDHGRHM 182          
BLAST of FC930861 vs. ExPASy Swiss-Prot
Match: LRTA_SYNY3 (Light repressed protein A homolog OS=Synechocystis sp. (strain PCC 6803) GN=lrtA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 48/110 (43.64%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  329 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRI---RRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESD--HG 643
            +KL+IQG N+ +T+ + ++VEEKV +AV    +L  +VDV LSV      +  RI    + EVT++     V+RA+E +E +YASIDLV+  I R+LRK KE+  D  HG
Sbjct:    1 MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHKAEVTVYA-NGTVIRAQEGSENLYASIDLVADKIARQLRKYKERIQDKQHG 104          
BLAST of FC930861 vs. ExPASy Swiss-Prot
Match: LRTA_SYNP2 (Light repressed protein A OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=lrtA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.935e-12
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  329 VKLIIQGKNLELTDTVKNHVEEKVGKAVLKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKESDHGRHM 652
            +KL+IQG N+ +T+++ ++VE K+ KA         +VDV LSV      +     + EVT++     V+RA+E +E +YASIDLVS  I R+LRK KEK      H+
Sbjct:    1 MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEVTVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHV 105          
The following BLAST results are available for this feature:
BLAST of FC930861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RR30_SPIOL5.080e-5278.8630S ribosomal protein 1, chloroplastic OS=Spinacia... [more]
LRTA_SYNY31.223e-1343.64Light repressed protein A homolog OS=Synechocystis... [more]
LRTA_SYNP23.935e-1239.81Light repressed protein A OS=Synechococcus sp. (st... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34109G12EF PostHarvP1 Citrus clementina cDNA clone C34109G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930861 ID=FC930861; Name=FC930861; organism=Citrus clementina; type=EST; length=652bp
GGGGCCCATCCAAAAAGAATATCCACTGAACCAACGGCGCTTCCCGCGTC
AGTGGCTAGTCTTTCAGCTGCATTCAGAGCTTTCAACATCACGGCCAGTA
CCATCTTCATGTTATCTTTCATCATCATCATCATCATCATCGTCGTCGTC
GTCGTCGTCGTCGTCAGTCTCTCCATTCGTCACTCCAAGAAAATCTCAAC
TTGCCAAAACGTTGTCGTACAATTCCAGTTTCTTCGGTCCTTTCAAGCAA
ATTACTGTAATGAGACCCACAAAAGTCCACACTAAGCCTCTGCCGGTTCG
AATGTCATGGGACGGTCCACTTTCTTCCGTCAAATTAATCATTCAAGGCA
AAAATCTCGAGTTAACCGATACAGTTAAAAACCATGTTGAAGAGAAAGTT
GGCAAGGCAGTTCTGAAGCATAGTCATCTGGTACGGGAAGTTGATGTTAG
GCTGTCTGTGCGCGGAGGAGAGTTCGGCAAAGGCCCTAGGATTCGCAGAT
GTGAGGTCACTTTGTTTACAAAGAAGCATGGAGTGGTCCGTGCAGAAGAA
GATGCAGAGACGGTGTATGCGAGTATAGATTTAGTATCGTCAATCATTCA
AAGGAAGCTGAGGAAGATCAAGGAGAAGGAGTCTGACCATGGTAGACATA
TG
back to top