FC930863

Overview
NameFC930863
Unique NameFC930863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig310 contig Ccv1_Contig310:229..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_ARATH (Eukaryotic translation initiation factor 3 subunit H OS=Arabidopsis thaliana GN=TIF3H1 PE=2 SV=2)

HSP 1 Score: 407.527 bits (1046), Expect = 3.472e-113
Identity = 192/233 (82.40%), Postives = 217/233 (93.13%), Query Frame = 1
Query:    1 SVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPSIP 699
            SVLEVTNCFPFP++++DEEIEADGANYQLEMMRCLREVNVDNNTVGWYQST+LG +QT ELIETF+NYQENI+RCVCIIYDPS+++ G LA KALKLSDSFM+LYR  NFTGEKLREKN SW+DIFEEIP+KVSNSAL+SAFMTELE DTPV+Q DYDRL  S++PFLE NMEFLI+CMDDLS+EQQKFQ+YYR+L+RQQAQQQ+WLQKRR EN ARK+AGEEPLPEEDPS P
Sbjct:   58 SVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMELYRGGNFTGEKLREKNFSWMDIFEEIPIKVSNSALVSAFMTELETDTPVSQGDYDRLHSSTTPFLENNMEFLIKCMDDLSMEQQKFQYYYRNLSRQQAQQQAWLQKRRTENMARKSAGEEPLPEEDPSNP 290          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_NEMVE (Eukaryotic translation initiation factor 3 subunit H OS=Nematostella vectensis GN=v1g168210 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.037e-53
Identity = 99/229 (43.23%), Postives = 155/229 (67.69%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPS 693
            LE+TNCFPFP  +  ++ + D  NYQ+E+MR LR VN+D+  VGWYQST LG +    L+++  +YQ++I   V +IYDP R++QG L  KA +LSD  M LY+   F+ +KL +  +S+  +F+EIP+ + NS+L++  + EL+ +TP    D   L LS+  +LE+N+  L+E +D+L  +  K+  Y RS+ RQQ Q++++LQ+R+ EN++R   GE+PLP+ED S
Sbjct:   55 LEITNCFPFPSNKAGDDEDDDDVNYQMEVMRRLRAVNIDHLHVGWYQSTYLGSYINRTLLDSQYSYQKSIEESVVLIYDPLRTSQGMLTLKAFRLSDEMMKLYKDGEFSADKLSKAGISFHSMFQEIPLVIKNSSLMNVLLCELDENTPTPSAD-QFLTLSTGSYLEKNVRVLMESVDELCQDSNKYHNYQRSVIRQQQQKENYLQRRQQENQSRIQRGEDPLPDEDLS 282          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_XENLA (Eukaryotic translation initiation factor 3 subunit H OS=Xenopus laevis GN=eif3h PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.449e-50
Identity = 93/227 (40.97%), Postives = 156/227 (68.72%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP Q  +++++ D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP +++QG+L+ KA +L+   M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+  + EL+   PVT++ ++ L LSSS  LE++++ L++ +D++S +  K+  Y R++ +QQ Q+  + Q+++ EN  R + GE PLPEED
Sbjct:   58 LEITNCFPFP-QHTEDDVDFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTFYGTFVSRALLDSQFSYQHAIEESVVLIYDPIKTSQGSLSLKAYRLTPKLMEICKEKDFSAEGLKKANVAYEDMFEEVPIVIKNSHLINVLVWELDKKAPVTEK-HELLNLSSSNHLEKSLQLLMDRVDEMSQDIVKYNTYQRNVGKQQQQKHQYTQRKQQENLQRLSRGETPLPEED 282          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_XENTR (Eukaryotic translation initiation factor 3 subunit H OS=Xenopus tropicalis GN=eif3h PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.199e-50
Identity = 94/227 (41.41%), Postives = 155/227 (68.28%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP Q  +++++ D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++ D+FEE+P+ + NS LI+    EL+   PVT++ ++ L LSSS  LE++++ L++ +D+LS +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ GE  LPEED
Sbjct:   59 LEITNCFPFP-QHTEDDVDFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTFYGTFVSRALLDSQFSYQHAIEESVVLIYDPIKTGQGSLSLKAYRLTPKLMEVCKEKDFSAEGLKKANIAFEDMFEEVPIIIKNSHLINVLAWELDKKAPVTEK-HELLNLSSSNHLEKSLQLLMDRVDELSQDIVKYNTYLRNISKQQQQKHQYTQRRQQENLQRQSRGETSLPEED 283          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EI3HA_DANRE (Eukaryotic translation initiation factor 3 subunit H-A OS=Danio rerio GN=eif3ha PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.619e-49
Identity = 95/229 (41.48%), Postives = 154/229 (67.25%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPS 693
            LE+TNCFPFP Q  ++++E D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP ++ QG+L  KA +L+   M++ +  +FT E L++  +++  +FEE+P+ + NS LI+  M +L+  + +  + ++ L LSSS  LE++++ L++ +DD+S +  K+  Y R+L++QQ Q+Q + Q+R+ EN  R++ GE PLPEED S
Sbjct:   59 LEITNCFPFP-QHTEDDVEFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVSRALLDSQFSYQHAIEESVVLIYDPLKTAQGSLCLKAYRLTPKLMEICKEKDFTPEGLKKAAVAYEHMFEEVPIFIKNSHLINVLMWDLQEKSTLADK-HELLNLSSSNHLEKSLQLLMDRVDDMSQDIVKYNTYCRNLSKQQQQKQQYQQRRQQENAQRQSRGEPPLPEEDIS 285          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EI3HB_DANRE (Eukaryotic translation initiation factor 3 subunit H-B OS=Danio rerio GN=eif3hb PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.033e-49
Identity = 93/227 (40.97%), Postives = 152/227 (66.96%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST+ G F +  L+++  +YQ  I   V +IYDP ++ QG+L  KA +L+   M++ +  +F+ E L++ ++ +  +FEE+P+ + NS LI+  + ELE  +    + ++ L LSSS  LE++++ L++ +DD+S +  K+  Y RSL++QQ Q+  ++Q+R+ EN  R++ GE PLPEED
Sbjct:   57 LEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTLYGSFVSRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLCLKAYRLTPKLMEICKEKDFSSEGLKKASVGYEHMFEEVPIVIKNSHLINVLLWELEEKSTAADK-HELLSLSSSSHLEKSLQMLMDRVDDMSQDIVKYNNYSRSLSKQQQQKHQYVQRRQQENAQRQSRGEPPLPEED 281          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_SALSA (Eukaryotic translation initiation factor 3 subunit H OS=Salmo salar GN=eif3h PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.755e-48
Identity = 95/229 (41.48%), Postives = 150/229 (65.50%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPS 693
            LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F +  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++  + +  +FEE+P+ + NS LI+  M ELE    V  + ++ L LSSS  LE++++ L++ +DD+S +  K+  Y R+L++QQ Q+  + Q+R+ EN  R+  GE PLPEED S
Sbjct:   68 LEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVSRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEICKEKDFSAEGLKKAMIGFEHMFEEVPIVIKNSHLINVLMWELEEKCTVADK-HELLNLSSSNHLEKSLQLLMDRVDDMSQDIVKYNTYSRNLSKQQQQKHQYTQRRQQENAQRQTRGETPLPEEDVS 294          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_RAT (Eukaryotic translation initiation factor 3 subunit H OS=Rattus norvegicus GN=Eif3h PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.911e-48
Identity = 94/229 (41.05%), Postives = 152/229 (66.38%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPS 693
            LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++  +FEE+P+ + NS LI+  M ELE  + V  + ++ L L+SS  L +N++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S
Sbjct:   76 LEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANITFEHMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHLGKNLQLLMDRVDEMSQDIIKYNTYMRNSSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLS 302          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_HUMAN (Eukaryotic translation initiation factor 3 subunit H OS=Homo sapiens GN=EIF3H PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.911e-48
Identity = 94/229 (41.05%), Postives = 152/229 (66.38%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEEDPS 693
            LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++  +FEE+P+ + NS LI+  M ELE  + V  + ++ L L+SS  L +N++ L++ +D++S +  K+  Y R+ ++QQ Q+  + Q+R+ EN  R++ GE PLPEED S
Sbjct:   76 LEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANITFEYMFEEVPIVIKNSHLINVLMWELEKKSAVADK-HELLSLASSNHLGKNLQLLMDRVDEMSQDIVKYNTYMRNTSKQQQQKHQYQQRRQQENMQRQSRGEPPLPEEDLS 302          
BLAST of FC930863 vs. ExPASy Swiss-Prot
Match: EIF3H_CHICK (Eukaryotic translation initiation factor 3 subunit H OS=Gallus gallus GN=EIF3H PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.911e-48
Identity = 92/227 (40.53%), Postives = 153/227 (67.40%), Query Frame = 1
Query:    7 LEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTMLGCFQTAELIETFLNYQENIRRCVCIIYDPSRSNQGALAFKALKLSDSFMDLYRSNNFTGEKLREKNLSWVDIFEEIPVKVSNSALISAFMTELEPDTPVTQRDYDRLQLSSSPFLERNMEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQSWLQKRRDENKARKAAGEEPLPEED 687
            LE+TNCFPFP Q  +++ + D   YQ+EMMR LR VN+D+  VGWYQST  G F T  L+++  +YQ  I   V +IYDP ++ QG+L+ KA +L+   M++ +  +F+ E L++ N+++ ++FEE+P+ + NS LI+  + ELE  + V  R ++ L L+SS  L ++++ L++ +D++S +  K+  Y R++++QQ Q+  + Q+R+ EN  R++ GE PLPEED
Sbjct:   72 LEITNCFPFP-QHTEDDADFDEVQYQMEMMRSLRHVNIDHLHVGWYQSTYYGSFVTRALLDSQFSYQHAIEESVVLIYDPIKTAQGSLSLKAYRLTPKLMEVCKEKDFSPEALKKANIAYENMFEEVPIVIKNSYLINVMLWELEKKSAVADR-HELLSLASSNHLGKSLQLLMDRVDEMSQDIVKYNTYLRNVSKQQQQKHQYQQRRQQENLQRQSRGEAPLPEED 296          
The following BLAST results are available for this feature:
BLAST of FC930863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
EIF3H_ARATH3.472e-11382.40Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_NEMVE4.037e-5343.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_XENLA2.449e-5040.97Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_XENTR3.199e-5041.41Eukaryotic translation initiation factor 3 subunit... [more]
EI3HA_DANRE4.619e-4941.48Eukaryotic translation initiation factor 3 subunit... [more]
EI3HB_DANRE6.033e-4940.97Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_SALSA1.755e-4841.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_RAT3.911e-4841.05Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_HUMAN3.911e-4841.05Eukaryotic translation initiation factor 3 subunit... [more]
EIF3H_CHICK3.911e-4840.53Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34109H02EF PostHarvP1 Citrus clementina cDNA clone C34109H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930863 ID=FC930863; Name=FC930863; organism=Citrus clementina; type=EST; length=704bp
AGCGTGCTTGAAGTTACGAACTGTTTCCCCTTCCCGATCCAGGAAGAGGA
CGAAGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGT
GTCTAAGAGAGGTTAATGTGGACAATAACACTGTTGGATGGTACCAATCA
ACAATGCTAGGATGTTTTCAAACAGCGGAGTTGATTGAAACTTTTCTGAA
CTACCAGGAGAATATTAGAAGGTGTGTCTGCATAATTTATGACCCTTCAA
GGTCCAATCAAGGTGCCTTAGCTTTTAAGGCTTTAAAGCTTTCTGATTCC
TTTATGGATCTTTACCGCAGCAACAATTTTACTGGGGAAAAGTTGAGGGA
GAAAAATTTATCATGGGTGGATATTTTTGAGGAAATTCCTGTTAAAGTCT
CAAATTCTGCACTTATTAGTGCCTTTATGACTGAGCTGGAACCTGATACT
CCAGTCACACAGCGTGATTACGACCGCCTGCAATTGTCAAGCAGTCCATT
CTTGGAGAGGAATATGGAATTTTTGATTGAATGCATGGATGATTTGTCAG
TGGAACAACAAAAGTTCCAATTTTACTATCGAAGCCTAACACGTCAGCAA
GCTCAGCAGCAATCATGGCTTCAGAAGAGAAGGGATGAGAATAAGGCACG
TAAAGCTGCTGGAGAGGAGCCTTTGCCTGAGGAGGATCCTTCAATCCCAT
CTTT
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