FC930866

Overview
NameFC930866
Unique NameFC930866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2189 contig Ccv1_Contig2189:16..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930866 vs. ExPASy Swiss-Prot
Match: RBM8A_RAT (RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.567e-36
Identity = 71/128 (55.47%), Postives = 92/128 (71.88%), Query Frame = 3
Query:  201 KKTKGRGFREEADSERHSRLADRHFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 581
            KK KGRGF  E  S    R     ++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of FC930866 vs. ExPASy Swiss-Prot
Match: RBM8A_HUMAN (RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.567e-36
Identity = 71/128 (55.47%), Postives = 92/128 (71.88%), Query Frame = 3
Query:  201 KKTKGRGFREEADSERHSRLADRHFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 581
            KK KGRGF  E  S    R     ++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of FC930866 vs. ExPASy Swiss-Prot
Match: RBM8A_BOVIN (RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.567e-36
Identity = 71/128 (55.47%), Postives = 92/128 (71.88%), Query Frame = 3
Query:  201 KKTKGRGFREEADSERHSRLADRHFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 581
            KK KGRGF  E  S    R     ++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSEEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of FC930866 vs. ExPASy Swiss-Prot
Match: RBM8A_XENTR (RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.240e-35
Identity = 72/128 (56.25%), Postives = 96/128 (75.00%), Query Frame = 3
Query:  201 KKTKGRGFREEADSERHSRLADRHFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 581
            KK KGRGF   AD    +R+ +  ++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFG--ADEGTRARIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFVRGPPKG 157          
BLAST of FC930866 vs. ExPASy Swiss-Prot
Match: RBM8A_MOUSE (RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3)

HSP 1 Score: 149.443 bits (376), Expect = 1.620e-35
Identity = 70/128 (54.69%), Postives = 92/128 (71.88%), Query Frame = 3
Query:  201 KKTKGRGFREEADSERHSRLADRHFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 581
            KK KGRGF  +  S    R     ++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEI+N+HLNLDRRTG++KGY L+EYE ++EAQ A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFGSKEGSRARMR---EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPPKG 157          
BLAST of FC930866 vs. ExPASy Swiss-Prot
Match: RB8AB_XENLA (RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-B PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.620e-35
Identity = 72/128 (56.25%), Postives = 96/128 (75.00%), Query Frame = 3
Query:  201 KKTKGRGFREEADSERHSRLADRHFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 581
            KK KGRGF   AD    +R+ +  ++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFG--ADEGTRTRIRE-DYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG 157          
BLAST of FC930866 vs. ExPASy Swiss-Prot
Match: RBM8A_DANRE (RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 70/125 (56.00%), Postives = 92/125 (73.60%), Query Frame = 3
Query:  201 KKTKGRGFREEADSERHSRLADRHFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 572
            KK KGRGF  E  +    R     ++++  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+  +NG EL+ Q ++VDW F  GP
Sbjct:   33 KKRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVDWCFVRGP 154          
BLAST of FC930866 vs. ExPASy Swiss-Prot
Match: RB8AA_XENLA (RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-A PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.608e-35
Identity = 72/128 (56.25%), Postives = 96/128 (75.00%), Query Frame = 3
Query:  201 KKTKGRGFREEADSERHSRLADRHFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGPSTG 581
            KK KGRGF   AD    +R+ +  ++S+  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEI+N+HLNLDRRTGF+KGYAL+EYE ++EA  A+  +NG +L+ Q ++VDW F  GP  G
Sbjct:   33 KKRKGRGFG--ADEGTKTRIREV-YDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGPPKG 157          
BLAST of FC930866 vs. ExPASy Swiss-Prot
Match: RBM8A_SALSA (RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.339e-34
Identity = 67/125 (53.60%), Postives = 92/125 (73.60%), Query Frame = 3
Query:  201 KKTKGRGFREEADSERHSRLADRHFESLGTDGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 572
            K+ KGRGF  E  +    R     ++++  DG  PGPQRS+EGWI+ VTGVHEEA E+D+ + F E+GEI+NLHLNLDRRTG++KGYAL+EYE ++EAQ A+  +NG +++ Q ++VDW F  GP
Sbjct:   33 KRRKGRGFGSEEGARSRVR---EDYDTVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQDMMGQPISVDWGFVRGP 154          
BLAST of FC930866 vs. ExPASy Swiss-Prot
Match: RBM8A_DROME (RNA-binding protein 8A OS=Drosophila melanogaster GN=tsu PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.283e-32
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 3
Query:  201 KKTKGRGFREEADSERHSRLADRHFESLGTDGGPGPQRSIEGWIILVTGVHEEAQEDDLQNVFGEYGEIRNLHLNLDRRTGFVKGYALIEYENFEEAQNAITAMNGGELLTQTLTVDWAFSNGP 572
            K  KGRGF  ++++       +R       +  PGPQRS+EGWI+ VT +HEEAQED++Q  F +YGEI+N+HLNLDRRTGF KGYAL+EYE  ++A  A  A+NG E++ QT+ VDW F  GP
Sbjct:   31 KHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154          
The following BLAST results are available for this feature:
BLAST of FC930866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RBM8A_RAT5.567e-3655.47RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm... [more]
RBM8A_HUMAN5.567e-3655.47RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE... [more]
RBM8A_BOVIN5.567e-3655.47RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2... [more]
RBM8A_XENTR1.240e-3556.25RNA-binding protein 8A OS=Xenopus tropicalis GN=rb... [more]
RBM8A_MOUSE1.620e-3554.69RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE... [more]
RB8AB_XENLA1.620e-3556.25RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8... [more]
RBM8A_DANRE3.608e-3556.00RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=... [more]
RB8AA_XENLA3.608e-3556.25RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8... [more]
RBM8A_SALSA2.339e-3453.60RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=... [more]
RBM8A_DROME1.283e-3252.42RNA-binding protein 8A OS=Drosophila melanogaster ... [more]

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Properties
Property NameValue
Genbank descriptionC34109H05EF PostHarvP1 Citrus clementina cDNA clone C34109H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930866 ID=FC930866; Name=FC930866; organism=Citrus clementina; type=EST; length=688bp
AAAACGCAAGACGCAGGCAAATCTCAAATCCCTAAAAGTTCGAAAAAAAC
ACAACAAAAATGGCGAACGCAGAAGTGGACGCGCTCGACTTCGAGGACGA
CGACTTGATGGACGAGGACGGGACTGCCGACGTCGATGCATCCTCTTCCC
CGCGGGCCCCGCAGCCCAAGCTTAAGTCCGCCATCACTGGTGGCGCACCT
AAGAAGACCAAAGGACGCGGTTTTCGTGAAGAAGCCGACTCCGAGCGACA
TAGCCGGCTCGCTGATCGTCATTTTGAGTCTCTTGGCACCGATGGGGGAC
CGGGTCCCCAACGATCTATTGAGGGATGGATAATTTTGGTTACTGGTGTG
CATGAAGAGGCACAAGAAGATGATTTACAAAATGTATTTGGTGAATATGG
GGAGATCAGAAACTTGCATTTGAATCTTGATCGTCGTACAGGTTTTGTGA
AGGGGTATGCGCTGATTGAATATGAGAATTTTGAGGAAGCACAGAATGCC
ATAACTGCAATGAATGGAGGTGAACTTCTTACACAGACCCTGACTGTTGA
TTGGGCCTTCAGCAATGGGCCTAGTACTGGACCCTTNCAAAGAAAGAACA
TGAGGCCTGGACGGACACATCGCTCAAGGAGTCCCAGGAGAAGATACTGA
TGCCGAGCGAGGACAAATGGTTATTTCAATATGGGTTT
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