FC930875

Overview
NameFC930875
Unique NameFC930875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930875_ssr453 microsatellite FC930875_ssr453:453..464. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14098 contig Ccv1_Contig14098:5..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.349e-90
Identity = 163/198 (82.32%), Postives = 183/198 (92.42%), Query Frame = 2
Query:  107 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            MPI RIAIGTPGEAS PDA++AA AEFFSM+IFVFAGQGSGMA+ KLT  G +TPAGL++ASL+HAFALFVAVSVGAN+SGGHVNPAVTFGAF+GG+ITLLR+ILYWIAQLLG+VVACLLLK STGG+ET+AF+LS GV+ WNAVVFEIVMTFGLVYTVYATAVDPKKG++G IAP+ IG IVGANIL GG FDGASM
Sbjct:    1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASM 198          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 5.914e-89
Identity = 160/198 (80.81%), Postives = 180/198 (90.91%), Query Frame = 2
Query:  107 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            MP+ RIA+G PGE SHPD  KAA+AEF SMLIFVFAG GSGMAFSKLTDGG +TP+GLI+ASLAHA ALFVAV+VGANISGGHVNPAVTFGAFVGG+I+L+++++YW+AQLLGSVVACLLLK +TGG    AF+LS+GV +WNAVVFEIVMTFGLVYTVYATAVDPKKG+LG IAPI IGFIVGANILAGG FDGASM
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASM 198          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.238e-87
Identity = 160/198 (80.81%), Postives = 178/198 (89.90%), Query Frame = 2
Query:  107 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            MP+ RIA+G PGE SHPD  KAA+AEF S LIFVFAG GSGMAFSKLTDGGA+TPAGLI+ASLAHA ALFVAVSVGANISGGHVNPAVTFGAFVGG+I+LL++++YW+AQLLGSVVACLLLK +TGG    AF+LS+GV + NAVV E+VMTFGLVYTVYATAVDPKKG+LG IAPI IGFIVGANILAGG FDGASM
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASM 198          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 8.838e-85
Identity = 161/198 (81.31%), Postives = 173/198 (87.37%), Query Frame = 2
Query:  107 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            MPI  IA+G+  E  HP ALKAALAEF S LIFVFAGQGSGMAFSKLT GGA+TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R +LYWIAQLLGS VAC LL+FSTGGL T  F L +GVS W A+V EIVMTFGLVYTVYATAVDPKKG+LGTIAPI IGFIVGANIL GG FDGASM
Sbjct:    1 MPIRNIAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFGL-TGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASM 197          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.154e-84
Identity = 158/198 (79.80%), Postives = 174/198 (87.88%), Query Frame = 2
Query:  107 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            MPI  IAIG P EA+ PDALKAALAEF S LIFV AG GSGMAF+KLT+ GA+TP+GL++A++AHAF LFVAVSVGANISGGHVNPAVTFGAF+GG+ITLLR ILYWIAQLLGSVVACL+LKF+TGGL   AF LS+GV   NA VFEIVMTFGLVYTVYATA+DPK G+LGTIAPI IGFIVGANILAGG F GASM
Sbjct:    1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASM 198          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.177e-83
Identity = 158/198 (79.80%), Postives = 171/198 (86.36%), Query Frame = 2
Query:  107 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            MPI RIA+G+  E  HP ALKAA AEF S LIFVFAGQGSGMAFSKLT GG +TPAGLI+A++AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITL R +LYW+AQLLGS VAC LL+FSTGG  T  F L +GVS W A+V EIVMTFGLVYTVYATAVDPKKG+LGTIAPI IGFIVGANIL GG FDGASM
Sbjct:    1 MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFGL-TGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASM 197          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 295.049 bits (754), Expect = 2.491e-79
Identity = 152/199 (76.38%), Postives = 168/199 (84.42%), Query Frame = 2
Query:  107 MPIYRIAIG-TPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            MP   IAIG    E  HP+AL+AALAEF S LIFVFAG GSG+AF+K+TD GA+TP+GL++A+LAHAF LFVAVSVGANISGGHVNPAVTFG  +GG+ITLLR ILYWIAQLLGSV AC LL F+TGG    AF LS+GV S NA+VFEIVMTFGLVYTVYATAVDPK G+LGTIAPI IGFIVGANILAGG F GASM
Sbjct:    1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASM 199          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.157e-76
Identity = 151/198 (76.26%), Postives = 164/198 (82.83%), Query Frame = 2
Query:  107 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            MPI  IA+GTP EA+HPD LKA LAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAVTFGAFVGG+ITLLR I+Y IAQLLGS+VA  LL F T      AF LS GV    A+V EIVMTFGLVYTVYATAVDPKKGN+G IAPI IGFIVGANIL GG F GASM
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASM 197          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 3.151e-74
Identity = 149/198 (75.25%), Postives = 162/198 (81.82%), Query Frame = 2
Query:  107 MPIYRIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            MPI  IA+GTP EA+HPD LKA LAEF S  IFVFAG GSG+A++KLT+ GA+TPAGLISAS+AHAFALFVAVSVGANISGGHVNPAV FGAFVGG+ITLLR I+Y IAQLLGS+V   LL F T      AF LS GV    A+V EIVMTFGLVYTVYATAVDPKKGN+G IAPI IGFIVGANIL GG F GASM
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTAS-SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASM 196          
BLAST of FC930875 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.280e-63
Identity = 120/194 (61.86%), Postives = 147/194 (75.77%), Query Frame = 2
Query:  119 RIAIGTPGEASHPDALKAALAEFFSMLIFVFAGQGSGMAFSKLTDGGASTPAGLISASLAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLLRSILYWIAQLLGSVVACLLLKFSTGGLETSAFALSSGVSSWNAVVFEIVMTFGLVYTVYATAVDPKKGNLGTIAPICIGFIVGANILAGGRFDGASM 700
            ++A G+ G++    ++KA +AEF + L+FVFAG GS +AF +LT+GGA  PAGL++ ++AHA ALFV VSV AN SGGH+NPAVTFG  VGGHIT+L  + YW+AQLLG+ VACLLL+F T G       +S G +    VVFEIV+TF LVYTVYATA DPKKG+LGTIAPI IGFIVGANILA G F G SM
Sbjct:    3 KLAFGSVGDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSM 196          
The following BLAST results are available for this feature:
BLAST of FC930875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
TIP13_ARATH5.349e-9082.32Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP12_ORYSJ5.914e-8980.81Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP12_MAIZE4.238e-8780.81Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP11_ORYSJ8.838e-8581.31Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP11_ARATH1.154e-8479.80Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP11_MAIZE2.177e-8379.80Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP12_ARATH2.491e-7976.38Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP1_MEDTR1.157e-7676.26Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA3.151e-7475.25Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP22_MAIZE7.280e-6361.86Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34110A02EF PostHarvP1 Citrus clementina cDNA clone C34110A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930875 ID=FC930875; Name=FC930875; organism=Citrus clementina; type=EST; length=700bp
GACCGCTACGCAATATAAAACGGCGTACAAAACAGAGCCAGCAAGCTTGT
AAGAAGCCTTTTGAGCTAAAACAAAATCGTTTTTCTTGACAAAATTTTCG
ATAAAAATGCCAATCTACAGAATTGCCATCGGCACGCCGGGAGAGGCAAG
CCATCCTGATGCGTTAAAGGCGGCTCTAGCTGAGTTTTTCTCGATGCTTA
TTTTTGTTTTCGCCGGCCAGGGATCCGGGATGGCCTTTAGCAAGCTAACG
GATGGCGGGGCGTCCACGCCGGCCGGTCTTATATCTGCATCACTGGCTCA
TGCATTTGCCCTATTTGTGGCTGTTTCAGTTGGTGCAAATATTTCTGGGG
GTCACGTGAACCCAGCTGTGACATTTGGTGCATTTGTTGGAGGCCACATT
ACATTGTTGAGGAGCATCCTGTATTGGATTGCACAGTTGCTAGGATCAGT
TGTTGCTTGCTTGCTGCTCAAGTTTTCCACCGGTGGATTGGAAACATCGG
CATTCGCACTATCATCTGGCGTCTCATCATGGAATGCAGTTGTGTTTGAG
ATTGTGATGACCTTTGGCTTGGTCTACACAGTGTATGCAACAGCAGTGGA
TCCAAAGAAGGGAAATCTGGGCACTATTGCACCAATTTGCATCGGTTTCA
TTGTTGGTGCCAACATTTTGGCTGGTGGGCGCTTTGATGGTGCATCAATG
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