FC930878

Overview
NameFC930878
Unique NameFC930878
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930878_ssr616 microsatellite FC930878_ssr616:616..627. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11793 contig Ccv1_Contig11793:51..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_COCIM (Eukaryotic translation initiation factor 3 subunit G OS=Coccidioides immitis GN=TIF35 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.480e-14
Identity = 51/138 (36.96%), Postives = 69/138 (50.00%), Query Frame = 1
Query:  172 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRA--PGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 579
            PP+QVI  +++G K VI Y+FNDDG KVK     R   +    ++ R  ER+ WAKFG       G  L   S  E ++ RP         E  KA G+      +     + CR C   G+H+T+RCPFKD  AP +
Sbjct:   23 PPQQVIS-NKDGTKTVITYRFNDDGKKVKTTRRIRT-TVVKEHVNPRVAERKAWAKFGLEKDHAPGPSLDTTSVGENIIFRPSVNWKAQAKEVEKAGGEKGGLKDQLKDKKVKCRIC--SGEHFTARCPFKDTMAPVD 156          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPCL (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus clavatus GN=tif35 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.253e-13
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 1
Query:  172 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 579
            PP+QV   +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR+WAKFG       G      S  E ++ RP    RA  ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP +
Sbjct:   23 PPQQVT-TNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAAGPSFDTTSVGENIVFRPSVNWRAQAAEAEKAGGEKGSIKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAPVD 156          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_NEOFI (Eukaryotic translation initiation factor 3 subunit G OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=TIF35 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 1
Query:  175 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 579
            P Q +  +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR+WAKFG       G      S  E ++ RP    RA  ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP +
Sbjct:   24 PAQQVTTNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAAGPSFDTTSVGENIIFRPSVNWRAQAAEAEKAGPEKGSIKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAPVD 157          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPTN (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=tif35 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 44/137 (32.12%), Postives = 67/137 (48.91%), Query Frame = 1
Query:  175 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERPRA--PGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 579
            P Q +  +++G K V+ Y+FNDDG KVK+    +   +    ++ +  ERR+WAKFG       G      S  E ++ RP         E  K  G+  +   +     + CR C   G+H+T+RCPFKD  AP +
Sbjct:   23 PAQQVTTNKDGTKTVVSYRFNDDGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAAGPSFDTTSVGENIVFRPSVNWKAQAAEAEKDGGEKGSMKDQLKDKKVKCRIC--SGEHFTARCPFKDTMAPVD 156          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_EMENI (Eukaryotic translation initiation factor 3 subunit G OS=Emericella nidulans GN=tif35 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.646e-13
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  175 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 579
            P Q I  +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR WAKFG       G      S  E ++ RP    +A  ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP +
Sbjct:   22 PPQQITTNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRTWAKFGLEKGHAAGPSFDTTSVGENIVFRPSVNWKAQAAEAEKNGGEKGSIKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAPVD 155          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPFU (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus fumigatus GN=tif35 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  175 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 579
            P Q +  +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR+WAKFG       G      S  E ++ RP    R   ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP +
Sbjct:   24 PAQQVTTNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAAGPSFDTTSVGENIVFRPSVNWRVQAAEAEKAGPEKGSIKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAPVD 157          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPFC (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=tif35 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  175 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 579
            P Q +  +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR+WAKFG       G      S  E ++ RP    R   ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP +
Sbjct:   24 PAQQVTTNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAAGPSFDTTSVGENIVFRPSVNWRVQAAEAEKAGPEKGSIKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAPVD 157          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_CULQU (Eukaryotic translation initiation factor 3 subunit G OS=Culex quinquefasciatus GN=eIF3-S4 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.061e-12
Identity = 47/132 (35.61%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  172 PPKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVG-SRLTMVSTEEILLERPRAPGSKPEETKA--AGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFK 558
            PP +++   ENG K V EYK+N D  KVK+    ++ +L    + K   +R+NWAKFGD+  +  G +  T   +E+I ++      +K EE K+  A DSL  + K       CR C  +G+HW+ +CP+K
Sbjct:   24 PPTEIV---ENGQKVVTEYKYNKDDKKVKVVRTYKITRLV---VPKSVAKRKNWAKFGDSAGDKPGPNPQTTFVSEDIYMQ---FVSNKEEEQKSDNALDSLKNIAK-------CRIC--EGEHWSVQCPYK 137          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_ASPOR (Eukaryotic translation initiation factor 3 subunit G OS=Aspergillus oryzae GN=tif35 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.061e-12
Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  175 PKQVIGPDENGVKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRLTMVSTEEILLERP----RAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 579
            P Q +  +++G K V+ Y+FND+G KVK+    +   +    ++ +  ERR+WAKFG       G      S  E +  RP    +A  ++ E+      S+    K   V   CR C   G+H+T+RCPFKD  AP +
Sbjct:   23 PAQQVTTNKDGTKTVVSYRFNDEGKKVKVTRRIKT-TVVREHVNPQVAERRSWAKFGLEKGHAPGPSFDTTSVGENIAFRPSINWKAQAAEAEKNGGEKGSMKDQLKDKKV--KCRIC--SGEHFTARCPFKDTMAPVD 156          
BLAST of FC930878 vs. ExPASy Swiss-Prot
Match: EIF3G_XENTR (Eukaryotic translation initiation factor 3 subunit G OS=Xenopus tropicalis GN=eif3g PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.385e-12
Identity = 47/138 (34.06%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  175 PKQVIGPDENG-VKKVIEYKFNDDGNKVKIXXXXRVRKLANARLSKRALERRNWAKFGDAVREDVGSRL--TMVSTEEILLERPRAPGSKPEETKAAGDSLAQLGKGGAVLMVCRTCGKKGDHWTSRCPFKDLAAPAE 579
            P++VI    NG +K + EYK ND+G K+KI    R  K+   + SK    R+NW KFG++  +  G  +  T VS + ++           +E +   + L      G  ++ CR C  KGDHWT+RCP+KD   P +
Sbjct:   45 PQEVI----NGKIKTITEYKLNDEGKKIKIV---RTFKIETLKASKVVAHRKNWKKFGNSEYDPPGPNVATTTVSDDVLMTFITSKEDLNNQEEEDPMNKLK-----GQKIVSCRIC--KGDHWTTRCPYKDTLGPMQ 168          
The following BLAST results are available for this feature:
BLAST of FC930878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
EIF3G_COCIM1.480e-1436.96Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPCL1.253e-1334.29Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_NEOFI1.636e-1333.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPTN1.636e-1332.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_EMENI3.646e-1333.09Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPFU6.219e-1332.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPFC6.219e-1332.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_CULQU1.061e-1235.61Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_ASPOR1.061e-1232.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3G_XENTR1.385e-1234.06Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34110A05EF PostHarvP1 Citrus clementina cDNA clone C34110A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930878 ID=FC930878; Name=FC930878; organism=Citrus clementina; type=EST; length=664bp
GNGAATCGCAAACCCTAAAACGCTTTGTCTCGCATCCTCTCCAACGCTTG
TGTTTTTCTTAATCTGATTCATTCGAAAAAGATGTCGGTTTCGACTCAAA
ATCCGACCCAACCAAAGCTCCGTTGGAGCGAACTGGACGAAGAAGACGGC
GAGGATTTGGACTTCCTGCTGCCGCCTAAACAAGTGATCGGCCCCGACGA
GAACGGAGTCAAGAAAGTTATTGAATACAAGTTTAACGATGACGGCAATA
AGGTCAAAATAACCACCACCACGCGCGTGCGCAAGCTCGCTAACGCTCGT
CTCAGCAAACGCGCGCTGGAGAGGAGAAACTGGGCCAAGTTCGGCGACGC
CGTTCGCGAAGACGTCGGTAGCAGACTTACCATGGTCTCCACCGAAGAGA
TCTTGCTGGAACGGCCTAGGGCTCCTGGTAGCAAACCAGAAGAGACAAAG
GCTGCAGGAGATTCCTTGGCGCAACTTGGGAAAGGTGGTGCTGTTCTCAT
GGTGTGTAGGACTTGTGGTAAGAAGGGTGATCACTGGACGTCAAGGTGCC
CTTTCAAGGATCTTGCTGCTCCAGCTGAGACATTCATTGATAAACCAGCT
GCATCAGAGACTGCAGCTGCTGCTGCTGGCGTGACCAAGGGACATATGTT
CCTCCTGGCATGAG
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