FC930879

Overview
NameFC930879
Unique NameFC930879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig450 contig Ccv1_Contig450:133..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: ALA1_ARATH (Phospholipid-transporting ATPase 1 OS=Arabidopsis thaliana GN=ALA1 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.170e-47
Identity = 82/167 (49.10%), Postives = 114/167 (68.26%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNSTIDIWSMGSVWTIAVVILVNILLAMDIQRWVFVTHAAVWGSIITTYACMVVLDSIPVFPNYWTIYHLAKSPTYWXXXXXXXXXXXXPRFLFKVVQQYFWPSDIQIAREAEVL 501
            DKDL  +TL+ +P+LYG G R E Y+  LFW TM DT+WQS  +F+IP++AY  STID  S+G +WTIA V++VN+ LAMD+ RW ++THAA+WGSI+    C++V+D IP  P YW I+ + K+  +W            PRF  K + +Y+ PSD++IAREAE L
Sbjct:  970 DKDLGRQTLLDHPQLYGVGQRAEGYSTTLFWYTMIDTIWQSAAIFFIPMFAYWGSTIDTSSLGDLWTIAAVVVVNLHLAMDVIRWNWITHAAIWGSIVAACICVIVIDVIPTLPGYWAIFQVGKTWMFWFCLLAIVVTSLLPRFAIKFLVEYYRPSDVRIAREAEKL 1136          
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: AT10D_HUMAN (Probable phospholipid-transporting ATPase VD OS=Homo sapiens GN=ATP10D PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 52/172 (30.23%), Postives = 92/172 (53.49%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNSTIDIWSMGSVWTIAVVILVNILLAMDIQRWVFVTHAAVWGSIITTYACMVVLDSIPVFPN-----YWTIYHLAKSPTYWXXXXXXXXXXXXPRFLFKVVQQYFWPSDIQIAREAEVL 501
            +KD+S +TLMQ P+LY +G + EAY    FW+T+ D  +QSLV F++P + YQ S  DI++ G+    A + +V + L ++ +   ++    + GSI++ +   +V  ++ V  N     YW +      P ++            PRF+++V+Q   +PS I  A+  + L
Sbjct: 1167 EKDVSAETLMQLPELYRSGQKSEAYLPHTFWITLLDAFYQSLVCFFVPYFTYQGSDTDIFAFGNPLNTAALFIVLLHLVIESKSLTWIHLLVIIGSILSYFLFAIVFGAMCVTCNPPSNPYWIMQEHMLDPVFYLVCILTTSIALLPRFVYRVLQGSLFPSPILRAKHFDRL 1338          
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: AT10D_MACFA (Probable phospholipid-transporting ATPase VD (Fragment) OS=Macaca fascicularis GN=ATP10D PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 45/152 (29.61%), Postives = 82/152 (53.95%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNSTIDIWSMGSVWTIAVVILVNILLAMDIQRWVFVTHAAVWGSIITTYACMVVLDSIPVFPN-----YWTIYHLAKSPTYWXXXXXXXXXXXXPRFLFK 441
            +KD+S +TLMQ P+LY +G + EAY    FW+T+ D  +QSLV F++P + YQ S IDI++ G+    A + ++ + L ++ +   ++    + GSI++ +   +V  ++ V  N     YW +      P ++            PRF+++
Sbjct:  430 EKDVSAETLMQLPELYKSGQKSEAYLPHTFWITLLDAFYQSLVCFFVPYFTYQGSDIDIFAFGNPLNTAALFIILLHLIIESKSLTWIHMLVITGSILSYFLFAIVFGAMCVTCNPPSNPYWIMQEHVLDPVFYLVCILTTCIALLPRFVYR 581          
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: AT10B_HUMAN (Probable phospholipid-transporting ATPase VB OS=Homo sapiens GN=ATP10B PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.338e-18
Identity = 53/174 (30.46%), Postives = 89/174 (51.15%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNSTIDIWSMGSVWTIAVVILVNILL--AMDIQRWVFVTHAAVWGSIITTYACMVVLDSIPVFPN-----YWTIYHLAKSPTYWXXXXXXXXXXXXPRFLFKVVQQYFWPSDIQIAREAEVL 501
            DKD+S +TL+  P+LY +G   E YN+  FW++M D  +QSL+ F+IP  AY+ S ID+++ G+   I  + L  ILL  AM+++ W       + GS +  +   ++ ++  V  N     YW +     +PT++            PR+ F  +Q     S I  A++ + L
Sbjct: 1166 DKDISAETLLALPELYKSGQNSECYNLSTFWISMVDAFYQSLICFFIPYLAYKGSDIDVFTFGT--PINTISLTTILLHQAMEMKTWTIFHGVVLLGSFLMYFLVSLLYNATCVICNSPTNPYWVMEGQLSNPTFYLVCFLTPVVALLPRYFFLSLQGTCGKSLISKAQKIDKL 1337          
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: AT10D_MOUSE (Probable phospholipid-transporting ATPase VD OS=Mus musculus GN=Atp10d PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 48/167 (28.74%), Postives = 87/167 (52.10%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNSTIDIWSMGSVWTIAVVILVNILLAMDIQRWVFVTHAAVWGSIITTYACMVVLDSIPVFPN-----YWTIYHLAKSPTYWXXXXXXXXXXXXPRFLFKVVQQYFWPSDIQIAR 486
            +KD+S +TL+Q P+LY +G R E Y    FW+T+ D  +QSLV F++P + YQ S IDI++ G+    A + ++ + L ++ +   ++      GSI++ +   +   ++ V  N     Y  +      P ++            PRFL++V+Q   +PS +  A+
Sbjct: 1164 EKDVSAETLLQLPELYRSGQRSEEYLPLTFWITLLDAFYQSLVCFFVPYFTYQGSDIDIFTFGNPLNTAALFIILLHLVIESKSLTWIHMLVTVGSILSYFFFALAFGALCVTCNPPSNPYGIMRKHMLDPVFYLVCVLTTFVALLPRFLYRVLQGSVFPSPVLRAK 1330          
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: AT10A_MOUSE (Probable phospholipid-transporting ATPase VA OS=Mus musculus GN=Atp10a PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 46/168 (27.38%), Postives = 82/168 (48.81%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNSTIDIWSMGSVWTIAVVILVNILLAMDIQRWVFVTHAAVWGSIITTYACMVVLDS-----IPVFPNYWTIYHLAKSPTYWXXXXXXXXXXXXPRFLFKVVQQYFWPSDIQIARE 489
            DKD+    L++ P+LY +G   E Y  + FWL M D  +QSLV F+IP  AY +S +D+++ G+  T   +    + L ++ + W ++   A   S    ++  ++ ++      P    YWT+  L   P ++            PR  FK +Q   +P+ +Q+ R+
Sbjct: 1156 DKDVPADMLLREPQLYKSGQNMEEYRPRAFWLNMVDAAFQSLVCFFIPYLAYYDSDVDVFTWGTPVTAIALFTFLLHLGIETKTWTWLNWLACGFSTFLFFSVALIYNTSCATCYPPSNPYWTMQTLLGDPLFYLTCLIAPIAALLPRLFFKALQGSLFPTQLQLGRQ 1323          
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: AT10A_HUMAN (Probable phospholipid-transporting ATPase VA OS=Homo sapiens GN=ATP10A PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 42/168 (25.00%), Postives = 80/168 (47.62%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNSTIDIWSMGSVWTIAVVILVNILLAMDIQRWVFVTHAAVWGSIITTYACMVVLDS-----IPVFPNYWTIYHLAKSPTYWXXXXXXXXXXXXPRFLFKVVQQYFWPSDIQIARE 489
            D+D+    L+  P+LY +G   E Y  + FW  M D  +QSLV F IP  AY +S +D+++ G+      ++   + L ++ + W ++       S++  +   ++ ++      P    YWT+  L   P ++            PR  F+ +Q   +P+ +Q+AR+
Sbjct: 1142 DRDVPANVLLTNPQLYKSGQNMEEYRPRTFWFNMADAAFQSLVCFSIPYLAYYDSNVDLFTWGTPIVTIALLTFLLHLGIETKTWTWLNWITCGFSVLLFFTVALIYNASCATCYPPSNPYWTMQALLGDPVFYLTCLMTPVAALLPRLFFRSLQGRVFPTQLQLARQ 1309          
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: ALA2_ARATH (Putative phospholipid-transporting ATPase 2 OS=Arabidopsis thaliana GN=ALA2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 40/165 (24.24%), Postives = 76/165 (46.06%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNSTIDIWSMGSVWTIAVVILVNILLAMDIQRWVFVTHAAVWGSIITTYACMVVLDSIPVFPNYWTIYHLAKSPTYWXXXXXXXXXXXXPRFLFKVVQQYFWPSDIQIAREAE 495
            DKDLS  ++MQ+P++          N   F      +L+ ++++F I ++AY     ++  +G V     + L   ++A +   +  + H ++WG+++  YA   +  +IP    Y  ++ L   P+YW            P F  K  +  + PS I I ++AE
Sbjct:  862 DKDLSEASVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIIVFVITIHAYAYEKSEMEELGMVALSGCIWLQAFVVAQETNSFTVLQHLSIWGNLVGFYAINFLFSAIPSSGMYTIMFRLCSQPSYWITMFLIVGAGMGPIFALKYFRYTYRPSKINILQQAE 1026          
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: AT8B2_HUMAN (Probable phospholipid-transporting ATPase ID OS=Homo sapiens GN=ATP8B2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 42/183 (22.95%), Postives = 83/183 (45.36%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNST-------IDIWSMGSVWTIAVVILVNILLAMDIQRWVFVTHAAVWGSIITTYACMVVLDS---IPVFPNYWTIYHLAKS----PTYWXXXXXXXXXXXXPRFLFKVVQQYFWPSDIQIAREAEVLRK 507
            D+D+  +  M+YPKLY  G     +N + F++ +   ++ S+++F+IP   + ++T        D  S       ++VI+V++ + +D   W  + H  +WGS+   +A +  + S     +FPN +     A++    PT W            P   F+ ++    P      R  +++RK
Sbjct:  944 DQDVPEQRSMEYPKLYEPGQLNLLFNKREFFICIAQGIYTSVLMFFIPYGVFADATRDDGTQLADYQSFAVTVATSLVIVVSVQIGLDTGYWTAINHFFIWGSLAVYFAILFAMHSNGLFDMFPNQFRFVGNAQNTLAQPTVWLTIVLTTVVCIMPVVAFRFLRLNLKPDLSDTVRYTQLVRK 1126          
BLAST of FC930879 vs. ExPASy Swiss-Prot
Match: AT8B2_MOUSE (Probable phospholipid-transporting ATPase ID OS=Mus musculus GN=Atp8b2 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 42/183 (22.95%), Postives = 82/183 (44.81%), Query Frame = 1
Query:    1 DKDLSHKTLMQYPKLYGAGHRQEAYNMQLFWLTMCDTLWQSLVLFYIPLYAYQNST-------IDIWSMGSVWTIAVVILVNILLAMDIQRWVFVTHAAVWGSIITTYACMVVLDS---IPVFPNYWTIYHLAKS----PTYWXXXXXXXXXXXXPRFLFKVVQQYFWPSDIQIAREAEVLRK 507
            D+D+  +  M+YPKLY  G     +N + F++ +   ++ S+++F+IP   +  +T        D  S       ++VI+V++ + +D   W  + H  +WGS+   +A +  + S     +FPN +     A++    PT W            P   F+ ++    P      R  +++RK
Sbjct:  944 DQDVPEQRSMEYPKLYEPGQLNLLFNKREFFICIAQGIYTSVLMFFIPYGVFAEATRDDGTQLADYQSFAVTVATSLVIVVSVQIGLDTGYWTAINHFFIWGSLAVYFAILFAMHSNGLFDMFPNQFRFVGNAQNTLAQPTVWLTIALTTAVCIMPVVAFRFLRLSLKPDLSDTVRYTQLVRK 1126          
The following BLAST results are available for this feature:
BLAST of FC930879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ALA1_ARATH1.170e-4749.10Phospholipid-transporting ATPase 1 OS=Arabidopsis ... [more]
AT10D_HUMAN4.635e-2030.23Probable phospholipid-transporting ATPase VD OS=Ho... [more]
AT10D_MACFA4.338e-1829.61Probable phospholipid-transporting ATPase VD (Frag... [more]
AT10B_HUMAN4.338e-1830.46Probable phospholipid-transporting ATPase VB OS=Ho... [more]
AT10D_MOUSE4.796e-1728.74Probable phospholipid-transporting ATPase VD OS=Mu... [more]
AT10A_MOUSE4.796e-1727.38Probable phospholipid-transporting ATPase VA OS=Mu... [more]
AT10A_HUMAN2.015e-1525.00Probable phospholipid-transporting ATPase VA OS=Ho... [more]
ALA2_ARATH2.724e-1224.24Putative phospholipid-transporting ATPase 2 OS=Ara... [more]
AT8B2_HUMAN1.765e-1122.95Probable phospholipid-transporting ATPase ID OS=Ho... [more]
AT8B2_MOUSE2.306e-1122.95Probable phospholipid-transporting ATPase ID OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionC34110A06EF PostHarvP1 Citrus clementina cDNA clone C34110A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930879 ID=FC930879; Name=FC930879; organism=Citrus clementina; type=EST; length=718bp
GACAAGGACTTAAGCCATAAGACACTAATGCAGTATCCAAAACTTTATGG
TGCGGGGCATAGACAAGAAGCATACAATATGCAGCTCTTCTGGCTCACAA
TGTGTGACACACTGTGGCAGAGTCTTGTTCTCTTCTATATACCTTTATAT
GCCTACCAGAACAGCACAATTGATATTTGGAGCATGGGCAGTGTATGGAC
AATAGCAGTGGTCATCCTTGTTAACATACTCCTGGCAATGGACATTCAGC
GTTGGGTATTCGTTACTCATGCTGCGGTATGGGGCTCGATAATTACTACG
TATGCCTGCATGGTGGTGTTGGATTCTATTCCTGTATTTCCCAATTACTG
GACAATCTACCATCTGGCTAAGTCACCTACCTACTGGCTCATCATTTTTC
TTATTTTAATTGTTGCATTGCTCCCTCGTTTTCTTTTCAAAGTTGTACAG
CAATATTTTTGGCCATCAGATATCCAGATAGCCAGAGAAGCTGAGGTACT
AAGGAAAGGGTCCAATTATTTGGCGCCACAAGCAGATCAAGTTTCCAGAT
AGATTATGCTTACATGTTGTTCTTGATCCATTCTTAAGATGGCTTCCCAT
GTGTTTATCCATCATACGGCATTCTTACAGCATGTAGCTCTGAACTTTTA
TGGTGAGTTACACAGTTGATTTTGCACCAGTGTGCATTTGGTCAGAGAGG
CGAGCAAGCCAGAGAGTG
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