FC930907

Overview
NameFC930907
Unique NameFC930907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14035 contig Ccv1_Contig14035:223..924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930907 vs. ExPASy Swiss-Prot
Match: Y3028_ARATH (Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 1
Query:   70 SSTTIISKCTVRP---DQKSRIKPLRLSVSDLPMLSCQYIQKGVLLTAPPFSITHFVSLLRQSLSVALSHFPALAGRFST-----DSDGHISILCNDTGVDFIHAKATFLSVNSLLSPI-DVPDSFKEFFAFDRTISYTGHVRPLAAVQVTELADGVFVGCTVNHAVTDGTSFWHFFNTFAEITKGAKKISKVP 624
            +  T IS   VRP   +Q+ R K + L+  DL +L   Y Q+G+L   P    THF+S LR SLS AL  +   AGR +      D      I C+ +G  FIHA +  +SV+ LL P   VPD F+ F+  +   S  G   PL A+QVTE+ DGVF+G   NH V DG S W+FF T+++I    ++ +  P
Sbjct:    2 ADVTFISSSIVRPQIINQEGREK-IHLTPFDLNLLYVDYTQRGLLFPKPDPE-THFISRLRTSLSSALDIYFPFAGRLNKVENHEDETVSFYINCDGSGAKFIHAVSDSVSVSDLLRPDGSVPDFFRIFYPMNGVKSIDGLSEPLLALQVTEMRDGVFIGFGYNHMVADGASIWNFFRTWSKICSNGQRENLQP 193          
BLAST of FC930907 vs. ExPASy Swiss-Prot
Match: DCR_ARATH (BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 75/209 (35.89%), Postives = 106/209 (50.72%), Query Frame = 1
Query:   82 IISKCTVRPDQKSR-IKPLRLSVSDLPMLSCQYIQKGVL--------LTAPPFSITHFVSLLRQSLSVALSHFPALAGRFSTDSDG--HISILCNDT---GVDFIHAKATFLSVNSLLSPIDVPDSFKEFFAFDRTISYTGHVRPLAAVQVTELADGVFVGCTVNHAVTDGTSFWHFFNTFAEITKGAKKISKVPDFSRDTVFDSXAVL 666
            I+SK  V+P +     K   L+  DLP L+  Y QK +L        L  P F     V  L+  L + L  F  LAG+ + D +G   +     D+   GV+F  A A  ++V+ L +  D    FKE   ++  ++  G  RPL AVQVT+L DG+ +G   NHAV DGTS WHF +++AEI +GA+ IS  P   R    D+   L
Sbjct:    5 IMSKTHVKPTKPVLGKKQFHLTTFDLPYLAFYYNQKFLLYKFQNLLDLEEPTFQ-NEVVENLKDGLGLVLEDFYQLAGKLAKDDEGVFRVEYDAEDSEINGVEFSVAHAADVTVDDLTAE-DGTAKFKELVPYNGILNLEGLSRPLLAVQVTKLKDGLAMGLAFNHAVLDGTSTWHFMSSWAEICRGAQSISTQPFLDRSKARDTRVKL 211          
The following BLAST results are available for this feature:
BLAST of FC930907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3028_ARATH2.727e-2539.18Uncharacterized acetyltransferase At3g50280 OS=Ara... [more]
DCR_ARATH4.075e-2135.89BAHD acyltransferase DCR OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionC34110C11EF PostHarvP1 Citrus clementina cDNA clone C34110C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930907 ID=FC930907; Name=FC930907; organism=Citrus clementina; type=EST; length=702bp
GACTCAAACTCATCACCATCATTCATAGATATTGGTTGAAGGGAATAAAA
GCAAGCAAACATGCCTTCTTCTTCAACCACAATCATCTCCAAATGCACAG
TGCGCCCCGATCAAAAATCAAGAATCAAGCCTCTCAGACTCTCTGTTTCA
GACCTCCCCATGCTCTCTTGCCAGTACATTCAAAAAGGCGTCCTCCTCAC
GGCCCCTCCATTTTCAATCACCCATTTCGTTTCATTGCTCAGGCAATCAC
TTTCGGTCGCTCTTTCCCACTTCCCCGCCCTCGCCGGCCGCTTCTCCACC
GACTCCGACGGCCACATCAGCATCCTCTGCAACGATACGGGCGTCGACTT
CATTCACGCCAAGGCCACTTTCCTTTCCGTCAACAGCCTCCTCTCGCCCA
TCGACGTCCCCGATTCTTTCAAGGAGTTCTTCGCTTTTGACAGAACCATC
AGCTACACCGGCCATGTCAGGCCCTTAGCCGCCGTCCAAGTGACGGAGCT
AGCTGACGGCGTCTTCGTCGGTTGTACGGTCAATCACGCCGTCACTGACG
GTACCTCCTTTTGGCACTTCTTTAATACATTCGCCGAAATCACTAAAGGC
GCCAAGAAAATCTCGAAAGTTCCCGACTTCTCCCGCGACACCGTTTTTGA
CTCGNCGGCGGTGCTCAAGTTCCCGCCGGTGGCCCCGCTGTACTTTCTCC
GG
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