FC930909
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: RPN12_YEAST (26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae GN=RPN12 PE=1 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16 Identity = 61/196 (31.12%), Postives = 96/196 (48.98%), Query Frame = 3 Query: 111 LVSELHGAIERKQFDAANDLLSRSKRALLMQNALIPTSSTPPQL----VVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686 L L A E + A LL K L+ N LIP S + +++ +++LE+GALASI+ + F Y+ QL+P+Y H SE D ++SK+ S ++ FH+ L+ L + ++EDD+ + YP++L+R LMEGSY K W +S +F F++ L IR+E Sbjct: 7 LTKSLSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNH------KLSESD----KKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIK----NLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDE 188
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: RPN12_SCHPO (26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe GN=rpn12 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14 Identity = 58/191 (30.37%), Postives = 89/191 (46.60%), Query Frame = 3 Query: 114 VSELHGAIERKQFDAANDLLSRSKRALLMQNALIPTSSTPPQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686 ++ L +RK ++A L + K L QN +PTS + AR V E G L SI+ D + F RY Q+ PFY H L +S+ +TG S A FHT LE + +++ E D +++ + LE+N+MEG++DKV +S P +F F ++ +RNE Sbjct: 6 LNHLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDK--EKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFY----HDSL---------VPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLF-----ERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFP--EFSYFMKIVMSMVRNE 174
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13 Identity = 64/196 (32.65%), Postives = 93/196 (47.45%), Query Frame = 3 Query: 111 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686 + +L G RK + L R K LL N L PT+ T Q ++LAR +LE+GA SI + D F RY QL+ +Y + LP ++ ++ G S A FHT LE L ++ + IK+PV LE+ LMEGSY+KV+ +P+E + F + L+ TIR+E Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELE------RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYAFFIDILLDTIRDE 177
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: PSMD8_HUMAN (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13 Identity = 64/196 (32.65%), Postives = 93/196 (47.45%), Query Frame = 3 Query: 111 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686 + +L G RK + L R K LL N L PT+ T Q ++LAR +LE+GA SI + D F RY QL+ +Y + LP ++ ++ G S A FHT LE L ++ + IK+PV LE+ LMEGSY+KV+ +P+E + F + L+ TIR+E Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELE------RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDE 177
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12 Identity = 63/196 (32.14%), Postives = 93/196 (47.45%), Query Frame = 3 Query: 111 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686 + +L G RK + L R K LL N L PT+ T Q ++LAR + E+GA SI + D F RY QL+ +Y + LP ++ ++ G S A FHT LE L + ++ + IK+PV LE+ LMEGSY+KV+ +P+E + F + L+ TIR+E Sbjct: 1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDIQEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAK------DIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDE 177
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12 Identity = 60/174 (34.48%), Postives = 86/174 (49.43%), Query Frame = 3 Query: 171 LSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686 L R K LL N L PT+ T Q ++LAR +LE+GA SI D F RY QL+ +Y + LP ++ ++ G S A FHT LE L + ++ + IK+PV LE+ LMEGSY+KV+ +P+E + F + L+ TIR+E Sbjct: 23 LGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILCKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAK------DIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDE 177 The following BLAST results are available for this feature:
BLAST of FC930909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930909 ID=FC930909; Name=FC930909; organism=Citrus clementina; type=EST; length=688bpback to top |