FC930909

Overview
NameFC930909
Unique NameFC930909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15366 contig Ccv1_Contig15366:2..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: RPN12_YEAST (26S proteasome regulatory subunit RPN12 OS=Saccharomyces cerevisiae GN=RPN12 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 61/196 (31.12%), Postives = 96/196 (48.98%), Query Frame = 3
Query:  111 LVSELHGAIERKQFDAANDLLSRSKRALLMQNALIPTSSTPPQL----VVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686
            L   L  A E   + A   LL   K  L+  N LIP  S    +    +++ +++LE+GALASI+  +   F  Y+ QL+P+Y    H        SE D    ++SK+         S  ++  FH+ L+ L +       ++EDD+ + YP++L+R LMEGSY K W   +S      +F  F++ L   IR+E
Sbjct:    7 LTKSLSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFSNNH------KLSESD----KKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIK----NLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDE 188          
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: RPN12_SCHPO (26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe GN=rpn12 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 58/191 (30.37%), Postives = 89/191 (46.60%), Query Frame = 3
Query:  114 VSELHGAIERKQFDAANDLLSRSKRALLMQNALIPTSSTPPQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686
            ++ L    +RK ++A    L + K  L  QN  +PTS    +    AR V E G L SI+  D + F RY  Q+ PFY    H  L           +S+   +TG       S    A FHT LE + +++       E D  +++ + LE+N+MEG++DKV    +S   P  +F  F   ++  +RNE
Sbjct:    6 LNHLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDK--EKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFY----HDSL---------VPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLF-----ERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFP--EFSYFMKIVMSMVRNE 174          
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: PSMD8_PONAB (26S proteasome non-ATPase regulatory subunit 8 OS=Pongo abelii GN=PSMD8 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 64/196 (32.65%), Postives = 93/196 (47.45%), Query Frame = 3
Query:  111 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686
            +  +L G   RK        + L R K  LL  N L PT+ T    Q ++LAR +LE+GA  SI + D   F RY  QL+ +Y  +    LP          ++   ++ G       S    A FHT LE       L    ++ +  IK+PV LE+ LMEGSY+KV+       +P+E +  F + L+ TIR+E
Sbjct:    1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELE------RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYAFFIDILLDTIRDE 177          
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: PSMD8_HUMAN (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 64/196 (32.65%), Postives = 93/196 (47.45%), Query Frame = 3
Query:  111 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686
            +  +L G   RK        + L R K  LL  N L PT+ T    Q ++LAR +LE+GA  SI + D   F RY  QL+ +Y  +    LP          ++   ++ G       S    A FHT LE       L    ++ +  IK+PV LE+ LMEGSY+KV+       +P+E +  F + L+ TIR+E
Sbjct:    1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELE------RLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDE 177          
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: PSMD8_BOVIN (26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 63/196 (32.14%), Postives = 93/196 (47.45%), Query Frame = 3
Query:  111 LVSELHGAIERKQ--FDAANDLLSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686
            +  +L G   RK        + L R K  LL  N L PT+ T    Q ++LAR + E+GA  SI + D   F RY  QL+ +Y  +    LP          ++   ++ G       S    A FHT LE L  +       ++ +  IK+PV LE+ LMEGSY+KV+       +P+E +  F + L+ TIR+E
Sbjct:    1 MYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFL-PTTGTKLTKQQLILARDIQEIGAQWSILRKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAK------DIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDE 177          
BLAST of FC930909 vs. ExPASy Swiss-Prot
Match: PSMD8_MOUSE (26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 60/174 (34.48%), Postives = 86/174 (49.43%), Query Frame = 3
Query:  171 LSRSKRALLMQNALIPTSSTP--PQLVVLARQVLELGALASIRQTDAQLFTRYYQQLQPFYDLERHAGLPGQSPSEVDFSTSQRSKITGXXXXXXXSMGDSANFHTVLEGLVEEASLKGGHVEDDACIKYPVELERNLMEGSYDKVWRETKSERVPSEDFGLFSNGLIGTIRNE 686
            L R K  LL  N L PT+ T    Q ++LAR +LE+GA  SI   D   F RY  QL+ +Y  +    LP          ++   ++ G       S    A FHT LE L  +       ++ +  IK+PV LE+ LMEGSY+KV+       +P+E +  F + L+ TIR+E
Sbjct:   23 LGRLKLVLLELNFL-PTTGTKLTKQQLILARDILEIGAQWSILCKDIPSFERYMAQLKCYY-FDYKEQLP---------ESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAK------DIQTNVYIKHPVSLEQYLMEGSYNKVF--LAKGNIPAESYTFFIDILLDTIRDE 177          
The following BLAST results are available for this feature:
BLAST of FC930909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RPN12_YEAST1.289e-1631.1226S proteasome regulatory subunit RPN12 OS=Sacchar... [more]
RPN12_SCHPO5.989e-1430.3726S proteasome regulatory subunit rpn12 OS=Schizos... [more]
PSMD8_PONAB2.276e-1332.6526S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_HUMAN3.882e-1332.6526S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_BOVIN1.927e-1232.1426S proteasome non-ATPase regulatory subunit 8 OS=... [more]
PSMD8_MOUSE2.516e-1234.4826S proteasome non-ATPase regulatory subunit 8 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC34110D01EF PostHarvP1 Citrus clementina cDNA clone C34110D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930909 ID=FC930909; Name=FC930909; organism=Citrus clementina; type=EST; length=688bp
CGTCTCCGCCGTTTCAATATTGCCTTCGTCCCAAATCGGCTAGGCTGCCT
CACTCCCTTTTAGCATTGTCCTGAACCCACACATCATCCACCATGTCCGA
TCTACAGTCCCTTGTGTCAGAGCTCCACGGTGCTATCGAGCGCAAACAAT
TCGATGCCGCCAACGACCTCCTCAGCCGTTCCAAGCGAGCTCTCCTTATG
CAAAATGCCTTGATCCCAACTTCTTCCACACCTCCGCAGCTTGTCGTCCT
TGCCCGCCAAGTCCTCGAACTCGGAGCACTCGCCTCCATCCGCCAGACCG
ACGCCCAGCTATTCACACGTTATTATCAGCAACTGCAGCCATTCTACGAC
CTCGAGAGACACGCTGGTCTGCCCGGGCAAAGCCCTTCGGAAGTTGACTT
TAGCACTAGTCAACGCAGCAAGATTACAGGACTGTATCTGCTTCTTCTTT
TGAGCATGGGCGACAGTGCCAACTTCCACACAGTGCTGGAGGGGTTAGTG
GAAGAGGCGAGCTTGAAGGGTGGCCATGTTGAGGATGATGCATGCATCAA
GTACCCCGTTGAGCTGGAGCGCAACTTGATGGAAGGAAGCTATGACAAGG
TGTGGAGGGAGACGAAGTCCGAGCGTGTTCCGTCGGAAGACTTTGGTCTG
TTTTCGAATGGTCTCATCGGCACCATTCGCAATGAAAT
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