FC930910

Overview
NameFC930910
Unique NameFC930910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length651
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2473 contig Ccv1_Contig2473:36..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_NEMVE (Eukaryotic translation initiation factor 3 subunit L OS=Nematostella vectensis GN=v1g169424 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.606e-50
Identity = 90/198 (45.45%), Postives = 131/198 (66.16%), Query Frame = 2
Query:   53 YEDAPADYDGSADARASSQDLGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            YED  + Y G  D    S +       VP+ +K F+   ++H+ E+N+YEI  +YE  F  L+DR F  TPWP  + +A  V  D VF +LY+E+++RH+Y +L PT++QR +S+ NYC LF  +L+    V + LPNQWLWD++DEF+YQFQ+F Q+R+K++NK E EI +LR   + WN++ VLN L +LVEKS I
Sbjct:   15 YEDDYSGYQGDGDDSVGSYN-------VPEEIKRFIHFFHQHVLEQNLYEIQSIYENGFNKLTDRYFNKTPWPEAEFIAPLVSGDQVFLILYKELYYRHIYNKLKPTVEQRFESYYNYCDLFNYILNTDEPVPLTLPNQWLWDIIDEFIYQFQAFSQFRSKLQNKPEDEIDVLRANSKIWNIHSVLNVLYSLVEKSRI 205          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_XENLA (Eukaryotic translation initiation factor 3 subunit L OS=Xenopus laevis GN=eif3l PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.188e-47
Identity = 95/231 (41.13%), Postives = 142/231 (61.47%), Query Frame = 2
Query:   41 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            +SYD     ADYDG        QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+ PWP  +A+A  V ND VF +LY+E+++RH+YA+++  PTL+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   + WNV+ VLN L +LV+KS I
Sbjct:   10 SSYDPYSYQADYDGHTGD--PKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDLIDQKVYEIQDIYENSWAKLTERFFKNAPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVTGGPTLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIEFLRSNPKIWNVHSVLNVLHSLVDKSNI 238          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_PANTR (Eukaryotic translation initiation factor 3 subunit L OS=Pan troglodytes GN=EIF3L PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.732e-47
Identity = 95/231 (41.13%), Postives = 143/231 (61.90%), Query Frame = 2
Query:   41 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            A+YD    P+DYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+TPWP  +A+A  V ND VF +LY+E+++RH+YA++S  P+L+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   + WNV+ VLN L +LV+KS I
Sbjct:   12 AAYDPYAYPSDYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_HUMAN (Eukaryotic translation initiation factor 3 subunit L OS=Homo sapiens GN=EIF3L PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.732e-47
Identity = 95/231 (41.13%), Postives = 143/231 (61.90%), Query Frame = 2
Query:   41 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            A+YD    P+DYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+TPWP  +A+A  V ND VF +LY+E+++RH+YA++S  P+L+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   + WNV+ VLN L +LV+KS I
Sbjct:   12 AAYDPYAYPSDYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_XENTR (Eukaryotic translation initiation factor 3 subunit L OS=Xenopus tropicalis GN=eif3l PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.365e-47
Identity = 95/230 (41.30%), Postives = 142/230 (61.74%), Query Frame = 2
Query:   44 SYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            SYD  +  ADYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK++PWP  +A+A  V ND VF +LY+E+++RH+YA++S  PTL+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   + WNV+ VLN L +LV+KS I
Sbjct:   11 SYDPYNYQADYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNSPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPTLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIEFLRSNPKIWNVHSVLNVLHSLVDKSNI 238          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_DANRE (Eukaryotic translation initiation factor 3 subunit L OS=Danio rerio GN=eif3l PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.313e-47
Identity = 97/232 (41.81%), Postives = 142/232 (61.21%), Query Frame = 2
Query:   44 SYDYEDAPADYD-GSADARASSQDLGYDPNF--------VPDSVKSFVVHLYRHIR--------------------EKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            +YD    P DYD  + D +A   DL Y+  +        +P+ +K+F+ + ++ I                     E+ +YEI  +YE S+  L+DR FK +PWP  +A+A  V ND VF +LY+E+++RH+YA++S  PTL QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   + WNV+ VLN L +LV+KS I
Sbjct:   11 NYDPYSYPNDYDYHTGDPKA---DLAYERQYEHQQTYHVIPEVIKNFLQYFHKTISDLIDQKVYELQANRVSSESIEQKIYEIQDVYENSWNKLTDRFFKTSPWPEAEAIASLVGNDAVFLILYKELYYRHIYAKVSGGPTLDQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIEFLRNNPKIWNVHSVLNVLHSLVDKSNI 239          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_BOVIN (Eukaryotic translation initiation factor 3 subunit L OS=Bos taurus GN=EIF3L PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.418e-46
Identity = 94/231 (40.69%), Postives = 141/231 (61.04%), Query Frame = 2
Query:   41 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            A+YD    P DYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+TPWP  + +A  V ND VF +LY+E+++RH+YA++S  P+L+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   + WNV+ VLN L +LV+KS I
Sbjct:   12 AAYDPYAYPGDYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAETIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_MOUSE (Eukaryotic translation initiation factor 3 subunit L OS=Mus musculus GN=Eif3l PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.419e-46
Identity = 94/231 (40.69%), Postives = 141/231 (61.04%), Query Frame = 2
Query:   41 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            A+YD    P DYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+TPWP  +A+A  V ND VF +LY+E+++RH+YA++S  P+L+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E E+  LR   + WNV+ VLN L +LV+KS I
Sbjct:   12 AAYDPYAYPGDYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEGEMDFLRSNPKVWNVHSVLNVLHSLVDKSNI 240          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_CHICK (Eukaryotic translation initiation factor 3 subunit L OS=Gallus gallus GN=EIF3L PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.419e-46
Identity = 95/231 (41.13%), Postives = 141/231 (61.04%), Query Frame = 2
Query:   41 ASYDYEDAPADYDGSADARASSQDLGYDPNF-------VPDSVKSFVVHLYRHIRE--------------------KNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLS--PTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMI 640
            A+YD      DYD         QDL Y+  +       +P+ +K+F+ + ++ + +                    + VYEI  +YE S+  L++R FK+TPWP  +A+A  V ND VF +LY+E+++RH+YA++S  PTL+QR +S+ NYC+LF  +L+  G   ++LPNQWLWD++DEF+YQFQSF QYR K   K+E+EI  LR   + WNV+ VLN L +LV+KS I
Sbjct:   12 AAYDPYAYSNDYD--MHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPTLEQRFESYYNYCNLFNYILNADGPAPLELPNQWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240          
BLAST of FC930910 vs. ExPASy Swiss-Prot
Match: EIF3L_USTMA (Eukaryotic translation initiation factor 3 subunit L OS=Ustilago maydis GN=UM01228 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.283e-43
Identity = 87/209 (41.63%), Postives = 129/209 (61.72%), Query Frame = 2
Query:   26 AIMAAASYDYEDAPADYDGSADARASSQDLGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQSLSDRLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLSPTLKQRIDSWDNYCSLFQVVLH--GVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQYDQAWNVYGVLNFLQALVEKSMIIQ 646
            A    A  + ++A A    +A A+A  Q        VPD ++ +VV   + ++  NV +I   YE ++  L+D+ +  + WP  + +A  V++D  F  LYRE+W+RH+Y+RLSP  + R  S+DNYC  F  VL+  G V ++LP QWLWD++DEF+YQFQSF Q+R K+ NK+E EIALL Q    W+ Y VLN L +L++KS I +
Sbjct:   57 AFAGEAGAEVDEAQAAALAAAHAQAQQQAQAAALAAVPDQIRKYVVLFNQAVQINNVQDISNAYEGTWNRLTDKFYARSEWPEAETIAPLVNDDQKFLTLYRELWYRHVYSRLSPDGEDRFHSYDNYCDFFNFVLNSDGPVQLELPAQWLWDIIDEFIYQFQSFSQWRNKVSNKSEDEIALL-QDGGVWSSYSVLNVLYSLIQKSRITE 264          
The following BLAST results are available for this feature:
BLAST of FC930910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
EIF3L_NEMVE3.606e-5045.45Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_XENLA2.188e-4741.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_PANTR3.732e-4741.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_HUMAN3.732e-4741.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_XENTR6.365e-4741.30Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_DANRE8.313e-4741.81Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_BOVIN1.418e-4640.69Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_MOUSE2.419e-4640.69Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_CHICK2.419e-4641.13Eukaryotic translation initiation factor 3 subunit... [more]
EIF3L_USTMA7.283e-4341.63Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC34110D02EF PostHarvP1 Citrus clementina cDNA clone C34110D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930910 ID=FC930910; Name=FC930910; organism=Citrus clementina; type=EST; length=651bp
GAACGAATTAAACTCTGATCTATAAGCAATAATGGCGGCGGCTAGTTACG
ATTACGAAGACGCTCCGGCCGATTACGATGGTTCAGCGGATGCGCGCGCT
TCATCCCAAGACCTAGGCTACGACCCTAACTTCGTGCCTGACTCCGTAAA
GTCATTCGTTGTTCATCTTTACCGCCACATTCGCGAGAAGAATGTCTACG
AGATCCACCAGATGTACGAGACGTCGTTTCAGAGTCTCTCCGACCGCCTC
TTCAAGGATACTCCCTGGCCATCCGTTGACGCCGTCGCTCATTATGTTGA
CAATGATCATGTTTTCTGTCTTCTCTATCGCGAGATGTGGTTCCGCCACT
TGTACGCTAGATTGTCGCCTACTCTCAAGCAGAGGATTGATTCTTGGGAC
AATTATTGTAGCCTGTTTCAGGTGGTGCTGCATGGAGTGGTGAATATGCA
GTTGCCAAACCAGTGGTTGTGGGATATGGTGGATGAGTTTGTTTACCAGT
TCCAGAGTTTCTGTCAGTACAGAGCCAAGATGAAGAACAAGACAGAGCAG
GAGATTGCACTTTTGAGGCAGTATGATCAGGCTTGGAATGTTTATGGCGT
GCTCAATTTCTTGCAAGCACTCGTGGAGAAGTCGATGATCATTCAGATTT
T
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