FC930916

Overview
NameFC930916
Unique NameFC930916
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930916 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 1.885e-74
Identity = 142/240 (59.17%), Postives = 165/240 (68.75%), Query Frame = 3
Query:    6 PRTVEEVFSDFKGRRAGLIKALTADVEKFYQQCDPEKENLCLYGLPNETWXXXXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNA-KQPKDQSA-NHNXXXXXXXXXXRPAESQTKAVKMSP-PPKXXXXXXXXXXXXXXQGAT-CGACGDNYGTDEFWICCDICEKWFPRQCVKITPAKAXAHQQYKCPSC 713
            PRTVEEVF DFKGRRAG+IKALT DV++F++ CDPEKENLCLYG PNE W                  GINFARDGM EKDWLSLVAVHSD+WLLAVAF+FGARFGF K +RK+LF M+NDLPTIFEVV G A KQ KD+S+ ++N          R +ES+ K  K  P   +              QG T CGACG++Y  DEFWICCD+CE WF  +CVKITPA+A   +QYKCPSC
Sbjct:    9 PRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSC 248          
The following BLAST results are available for this feature:
BLAST of FC930916 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH1.885e-7459.17PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC34110D09EF PostHarvP1 Citrus clementina cDNA clone C34110D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930916 ID=FC930916; Name=FC930916; organism=Citrus clementina; type=EST; length=713bp
CTATACCTAGAACTGTAGAGGAGGTTTTCAGCGATTTTAAGGGCAGACGG
GCTGGCTTGATTAAGGCTTTAACAGCTGATGTTGAGAAGTTCTACCAGCA
GTGCGATCCCGAAAAAGAGAACTTGTGCCTATACGGGCTTCCTAATGAGA
CATGGGAAGTTAACCTGCCTGTTGAGGAAGTGCCTCCCGAGCTCCCTGAA
CCAGCGTTAGGTATAAACTTTGCTAGAGATGGAATGCAGGAGAAGGACTG
GTTATCACTGGTTGCAGTGCACAGTGATTCATGGTTGCTTGCTGTAGCTT
TTTATTTTGGTGCACGCTTTGGATTTGGCAAAAATGAAAGGAAGAAACTT
TTCCAGATGATAAATGATCTCCCGACCATCTTTGAAGTTGTAACTGGAAA
TGCTAAGCAACCAAAGGACCAATCTGCTAATCACAATAGCAGCAAAAGCA
AATCGAGTGGAAAGTCTCGTCCAGCTGAATCACAAACCAAAGCAGTGAAG
ATGTCTCCACCACCGAAGGACGATGATGATAGTGGGGATGAAGAAGAGGA
AGATGATGAACAGGGCGCCACCTGTGGAGCATGCGGGGATAACTATGGCA
CTGACGAATTCTGGATCTGCTGCGATATCTGTGAGAAATGGTTCCCACGG
CAATGTGTAAAGATTACACCTGCGAAGGCCGNAGCACATCAGCAGTACAA
GTGCCCCAGCTGC
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