FC930920

Overview
NameFC930920
Unique NameFC930920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930920 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 1.845e-70
Identity = 120/166 (72.29%), Postives = 132/166 (79.52%), Query Frame = 1
Query:  124 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKG 621
            G GW +AHATFY              YGNLYS+GYGTNTAALSTALFNNG+SCGACFEI+C ND +WC PGSI VTATNFC          GGWCNPPQQHFDLSQPVF++IAQY+AGIVPV+YRRVPC R+GGIRFTINGHSYFNLVLITNVGGAGDV +  +KG
Sbjct:   24 GGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKG 189          

HSP 2 Score: 25.7942 bits (55), Expect = 1.845e-70
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  615 QGSRTDWQPMSRN 653
            +GSRT WQ MSRN
Sbjct:  188 KGSRTGWQAMSRN 200          
BLAST of FC930920 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 1.544e-69
Identity = 118/167 (70.66%), Postives = 131/167 (78.44%), Query Frame = 1
Query:  121 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKG 621
            Y  GW +AHATFY              YGNLYS+GYGTNTAALSTALFNNG+SCGACFEIKC +D  WC PG+I VTATNFC          GGWCNPP  HFDLSQPVF++IAQYKAG+VPVSYRRVPC R+GGIRFTINGHSYFNLVL+TNVGGAGDV +V++KG
Sbjct:   26 YDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKG 192          

HSP 2 Score: 25.409 bits (54), Expect = 1.544e-69
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  615 QGSRTDWQPMSRN 653
            +GSRT WQ MSRN
Sbjct:  191 KGSRTRWQQMSRN 203          
BLAST of FC930920 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.544e-69
Identity = 118/171 (69.01%), Postives = 134/171 (78.36%), Query Frame = 1
Query:  121 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGQELI 633
            YG GW +AHATFY              YGNLYS+GYGT+TAALSTALFNNG+SCG+CFEI+C ND +WC PGSI VTATNFC          GGWCNPP +HFDL+QPVF++IAQY+AGIVPVSYRRVPC R+GGIRFTINGHSYFNLVLITNVGGAGDV + +IKG   +
Sbjct:   22 YGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTV 192          

HSP 2 Score: 25.0238 bits (53), Expect = 1.544e-69
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  615 QGSRTDWQPMSRN 653
            +GSRT WQ MSRN
Sbjct:  187 KGSRTVWQAMSRN 199          
BLAST of FC930920 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.713e-65
Identity = 115/167 (68.86%), Postives = 126/167 (75.45%), Query Frame = 1
Query:  121 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKG 621
            Y  GW +A ATFY              YGNLYS+GYGTNTAALSTALFN G SCGACF+IKCV+DP+WC  G+I VT TNFC          GGWCNPPQ HFDL+QP+F +IAQYKAG+VPV YRRV C RKGGIRFTINGHSYFNLVLITNV GAGDV +VSIKG
Sbjct:   25 YSSGWVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKG 191          

HSP 2 Score: 22.3274 bits (46), Expect = 3.713e-65
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  615 QGSRTDWQPMSRN 653
            +G+ T WQ MSRN
Sbjct:  190 KGTNTRWQSMSRN 202          
BLAST of FC930920 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.400e-64
Identity = 113/168 (67.26%), Postives = 127/168 (75.60%), Query Frame = 1
Query:  124 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGS--IFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKG 621
            G  W +AHATFY              YGNLYS+GYGTNTAALSTALFNNGMSCGACFE+KC NDP+WC  GS  I +TATNFC          GGWCNPP++HFDL+ PVF +IAQY+AGIVPVSYRRVPC ++GGIRFTINGH YFNLVLITNV GAGD+   S+KG
Sbjct:   28 GGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKG 195          

HSP 2 Score: 22.7126 bits (47), Expect = 1.400e-64
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  615 QGSRTDWQPMSRN 653
            +GSRT W  +SRN
Sbjct:  194 KGSRTGWMSLSRN 206          
BLAST of FC930920 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.537e-64
Identity = 113/166 (68.07%), Postives = 127/166 (76.51%), Query Frame = 1
Query:  130 GWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGQE 627
            GW   HATFY              YGNLY +GYGTNTAALSTALFNNG++CGAC+E+KC +DPRWC   +I VTATNFC          GGWCNPP QHFDL++P F QIAQY+AGIVPVS+RRVPC +KGGIRFTINGHSYFNLVLI+NVGGAGDV AVSIKG +
Sbjct:   29 GWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSK 194          
BLAST of FC930920 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.301e-63
Identity = 111/170 (65.29%), Postives = 126/170 (74.12%), Query Frame = 1
Query:  124 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKGQE 627
            G  W  AHATFY              YGNLYS+GYGTNTAALST+LFN+G SCGACFEIKCVNDP+WC PG  S+FVTATNFC          GGWCNPP+ HFDL+ PVF +IA+Y+AGIVP+SYRRV C + GGIRFTINGH YFNLVLITNV GAGD+   S+KG +
Sbjct:   31 GGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSK 200          
BLAST of FC930920 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.501e-63
Identity = 108/167 (64.67%), Postives = 126/167 (75.45%), Query Frame = 1
Query:  121 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKG 621
            YG GW  AHATFY              YGNLYS+GYGTNTAALSTALFN+G +CG+C+E++C N    C PGSI VTATNFC          GGWCNPP+ HFD+++P F  IAQY+AGIVPVS+RRVPC +KGG+RFT+NGHSYFNLVL+TNV GAGDVR+VSIKG
Sbjct:   21 YG-GWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKG 186          

HSP 2 Score: 28.8758 bits (63), Expect = 7.501e-63
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  615 QGSRTDWQPMSRN 653
            +GSRT WQPMSRN
Sbjct:  185 KGSRTGWQPMSRN 197          
BLAST of FC930920 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.501e-63
Identity = 108/167 (64.67%), Postives = 126/167 (75.45%), Query Frame = 1
Query:  121 YGQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKG 621
            YG GW  AHATFY              YGNLYS+GYGTNTAALSTALFN+G +CG+C+E++C N    C PGSI VTATNFC          GGWCNPP+ HFD+++P F  IAQY+AGIVPVS+RRVPC +KGG+RFT+NGHSYFNLVL+TNV GAGDVR+VSIKG
Sbjct:   21 YG-GWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSYFNLVLVTNVAGAGDVRSVSIKG 186          

HSP 2 Score: 28.8758 bits (63), Expect = 7.501e-63
Identity = 11/13 (84.62%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  615 QGSRTDWQPMSRN 653
            +GSRT WQPMSRN
Sbjct:  185 KGSRTGWQPMSRN 197          
BLAST of FC930920 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 8.434e-63
Identity = 110/168 (65.48%), Postives = 126/168 (75.00%), Query Frame = 1
Query:  124 GQGWTDAHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGAGDVRAVSIKG 621
            G  W +AHATFY              YGNLYS+GYG NTAALSTALFNNG+SCG+CFE+KC+NDP WC PG  SI +TATNFC          GGWCNPP++HFDL+ P+F  IA+YKAGIVPVSYRR+PC +KGGIRFTING  YFNLVL+TNV GAGDV  VS+KG
Sbjct:   29 GGPWINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKG 196          
The following BLAST results are available for this feature:
BLAST of FC930920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
EXPA1_ARATH1.845e-7072.29Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH1.544e-6970.66Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP10_ARATH1.544e-6969.01Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP14_ARATH3.713e-6568.86Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA4_ARATH1.400e-6467.26Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA8_ARATH1.537e-6468.07Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP16_ARATH1.301e-6365.29Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA4_ORYSJ7.501e-6364.67Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI7.501e-6364.67Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA9_ARATH8.434e-6365.48Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110E01EF PostHarvP1 Citrus clementina cDNA clone C34110E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930920 ID=FC930920; Name=FC930920; organism=Citrus clementina; type=EST; length=654bp
ATCACTCACAGCAAGAACCTCTCTTTCTCTCTTAAAAAGATACGCAAGCA
AAAGGGTTTCAGGAACATGGCATTTCTTGGGCTGCTGTTGTTGGGGATTC
TTTCTTTAGTCTCATCTGTTTATGGCCAGGGATGGACTGATGCTCATGCC
ACTTTTTATGGTGGGGGTGATGCCTCTGGTACAATGGGTGGCGCTTGTGG
GTATGGAAACTTATACAGCGAGGGATATGGGACAAACACAGCAGCTCTGA
GCACTGCACTTTTCAACAATGGCATGAGCTGTGGGGCTTGTTTTGAGATC
AAGTGTGTTAATGACCCAAGATGGTGCCGTCCGGGCTCCATTTTTGTTAC
TGCCACAAATTTTTGCCCTCCAAATAATGCTCTCCCAAACAATGCCGGTG
GCTGGTGCAATCCTCCCCAGCAACATTTTGACCTCTCTCAGCCTGTGTTT
GAACAAATTGCTCAGTACAAAGCTGGGATAGTACCTGTGTCTTACAGAAG
GGTTCCATGCAGTAGGAAGGGAGGCATCAGATTCACGATCAACGGCCATT
CTTACTTCAACTTAGTCCTAATCACAAACGTCGGAGGCGCTGGTGATGTG
CGTGCTGTTTCAATCAAGGGTCAAGAACTGATTGGCAACCCATGTCAAGG
AACT
back to top