FC930928

Overview
NameFC930928
Unique NameFC930928
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR_PENGR (Polygalacturonase OS=Penicillium griseoroseum GN=PGG1 PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.321e-77
Identity = 134/210 (63.81%), Postives = 160/210 (76.19%), Query Frame = 2
Query:    2 FSIDGAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGGA 631
            FSI+GAKELTL+G+TVD  DGDS GGHNTDAFDVGSSNGVYI SP VHNQDDCLA+NSG+N+HFTGAQCT            R+DN VDGVT+E+C IK+S NGVR+K++YG TG+++GVTYKDITLSGI  YG+VIEQDY+N                 ++NVHGTV S   + YILCA GACS+WSW  V++ GG+TS+KCKGIP GA
Sbjct:  165 FSINGAKELTLSGITVDTADGDSNGGHNTDAFDVGSSNGVYITSPIVHNQDDCLAVNSGTNVHFTGAQCTGGHGISIGSVGGRSDNTVDGVTVESCTIKDSDNGVRIKTVYGATGTVQGVTYKDITLSGIAKYGIVIEQDYENGSPTGTPTSGVPITDLTLDNVHGTVASSGVDTYILCASGACSDWSWSGVSITGGQTSKKCKGIPSGA 374          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR2_PENOL (Polygalacturonase 2 OS=Penicillium olsonii GN=PG2 PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.493e-62
Identity = 116/211 (54.98%), Postives = 147/211 (69.67%), Query Frame = 2
Query:    2 FSIDGAKELTLNGVTVDNLDGDS-QGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGGA 631
            FSI+GA +LTL+G+TVDN DGD+ +GGHNTDAFDVGSS G+ I   TV+NQDDCLA+NSG++I FTG  C+            R++N V  V IEN  I++S NGVR+K++Y  TGS++ VTYKDITLSGIT YG+VIEQDY+N                 ++ V GTV S  TNVYILCAEGACS+W+W  V+V GG+TS  C+ +P  A
Sbjct:  168 FSINGATDLTLSGITVDNRDGDTDEGGHNTDAFDVGSSTGITITGATVYNQDDCLAVNSGTDITFTGGLCSGGHGLSIGSVGGRSNNDVANVIIENSQIQDSTNGVRIKTVYEATGSVKNVTYKDITLSGITKYGIVIEQDYENGSPTGTPTDGVPITDLTLDGVKGTVASSGTNVYILCAEGACSDWTWDGVSVSGGKTSSACENVPSSA 378          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR1_SCLSC (Endo-polygalacturonase OS=Sclerotinia sclerotiorum GN=PG1 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.503e-60
Identity = 118/211 (55.92%), Postives = 143/211 (67.77%), Query Frame = 2
Query:    2 FSIDGAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGGAK 634
            FSI+ A  LTL+G+T+DN  G+S G HNTDAFDVGSS  + I    V NQDDCLAINSG+ I FTG  C+            R+DN+V  V IE+  +KNS NGVR+K++ G TGS+ GVTYKDITLSGIT YGVVIEQDY+N                 ++NVHGTV+S ATNVY+LCA+  CS W+W DVNV GG+TS KC G+P G K
Sbjct:  173 FSINSASGLTLSGITIDNSAGNSLG-HNTDAFDVGSSTDITISGANVQNQDDCLAINSGTGITFTGGTCSGGHGLSIGSVGGRSDNVVSDVIIESSTVKNSANGVRIKTVLGATGSVSGVTYKDITLSGITSYGVVIEQDYENGSPTGKPTSGVPITGVTLSNVHGTVSSSATNVYVLCAK--CSGWTW-DVNVTGGKTSTKCAGLPSGVK 379          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR2_ASPNG (Endopolygalacturonase-2 OS=Aspergillus niger GN=pgaB PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.740e-56
Identity = 104/210 (49.52%), Postives = 137/210 (65.24%), Query Frame = 2
Query:    2 FSIDGAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGGA 631
            FS+  A ++T   VT++N DGD+QGGHNTDAFDVG+S GV II P VHNQDDCLA+NSG NI FTG  C             R++N+V  VTIE+  + NS N VR+K+I G TGS+  +TY +I +SGI+DYGVVI+QDY++                 + +V G+V+SGAT +Y+LC  G+CS+W+W DV V GG+ S  CK  P  A
Sbjct:  152 FSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGENIWFTGGTCIGGHGLSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSGSCSDWTWDDVKVTGGKKSTACKNFPSVA 360          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR1_ASPNG (Polygalacturonase-1 OS=Aspergillus niger GN=pgaA PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.135e-55
Identity = 100/205 (48.78%), Postives = 128/205 (62.44%), Query Frame = 2
Query:   17 AKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGGA 631
            A  + LN  T+DN DGD  GGHNTD FD+  S GVYI   TV NQDDC+AINSG +I FTG  C+            R DN V  VTI +  + NS NGVR+K+IY  TG +  +TY +I LSGITDYG+VIEQDY+N                 ++ V GT+   AT VYILC +G+CS+W+W  V++ GG+TS+KC+ +P GA
Sbjct:  162 ATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGESISFTGGTCSGGHGLSIGSVGGRDDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYENGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDGSCSDWTWSGVDLSGGKTSDKCENVPSGA 366          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR2_ASPTU (Polygalacturonase-2 OS=Aspergillus tubingensis GN=pgaII PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.052e-54
Identity = 102/210 (48.57%), Postives = 136/210 (64.76%), Query Frame = 2
Query:    2 FSIDGAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGGA 631
            FS+  A ++TL  +T++N DGD+ GGHNTDAFDVG+S GV II P VHNQDDCLAINSG NI FT   C             R++N+V  VTIE+  + NS N VR+K++ G TGS+  +TY +I +SGI+DYGVVI+QDY++                 + +V GTV+S AT++Y+LC  G+CS+W+W DV V GG+ S  CK  P  A
Sbjct:  152 FSVQ-ADDITLTDITINNADGDTLGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAINSGENIWFTSGTCIGGHGLSIGSVGGRSNNVVKNVTIEHSTVSNSENAVRIKTVSGATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVTITDVKLESVTGTVDSKATDIYLLCGSGSCSDWTWDDVKVTGGKKSTACKNYPSVA 360          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR1_COLLN (Endopolygalacturonase 1 OS=Colletotrichum lindemuthianum GN=PG1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.680e-54
Identity = 107/210 (50.95%), Postives = 132/210 (62.86%), Query Frame = 2
Query:    2 FSIDGAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGGA 631
            FSI+GA  L +  V+VDN  GDS GGHNTDAFDVGSS GVYI    V NQDDCLA+NSG+NI FTG  C+            R DN+V  V+I N  I NS NGVR+K++ G TG +  +TY  ITLS I  YG+VIEQDY+N                 ++ + G+V+S AT VYILCA  +C+NW W  V+V GG+ S KC GIP G+
Sbjct:  152 FSINGAANLGVYDVSVDNSAGDSAGGHNTDAFDVGSSTGVYISGADVKNQDDCLAVNSGTNITFTGGTCSGGHGLSIGSVGGRKDNVVKSVSITNSKIINSDNGVRIKTVAGATGPVSDITYSGITLSNIAKYGIVIEQDYENGSPTGKPTSGVPISGLTLSKISGSVSSSATPVYILCA--SCTNWKWSGVSVTGGKKSSKCTGIPSGS 359          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR_PENJA (Polygalacturonase OS=Penicillium janthinellum PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 5.971e-54
Identity = 100/210 (47.62%), Postives = 131/210 (62.38%), Query Frame = 2
Query:    2 FSIDGAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGGA 631
            FSI  +  L ++GVT+DN DGD  GGHNTD FD+  S GV I +  V NQDDC+AINSG NI+FTG  C+            R DN V  VTI +  + +S NGVR+K++Y  TGS+  VT+ DIT+SGITDYG+VIEQDY+N                 +  + G+V S A  VYILC + ACS+W+W  V++  G+TS KC+ +P GA
Sbjct:  161 FSIQ-SDNLIIDGVTIDNSDGDENGGHNTDGFDISESTGVTIRNAVVKNQDDCIAINSGQNIYFTGGTCSGGHGLSIGSVGGRDDNTVKNVTITDSTVTDSANGVRIKTVYDATGSVSDVTFSDITVSGITDYGIVIEQDYENGSPTGTPTSGVPITDLTVKGITGSVESDAVEVYILCGDDACSDWTWSGVDITSGQTSSKCENVPSGA 369          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLR_COCCA (Polygalacturonase OS=Cochliobolus carbonum GN=PGN1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.871e-53
Identity = 97/210 (46.19%), Postives = 128/210 (60.95%), Query Frame = 2
Query:    2 FSIDGAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGGA 631
            FSI+G   LTL+ +T+DN  GDS G HNTDAFD+GSS+G+ I +  + NQDDC+AINSGS+IH T  QC+            R DN V GV +    I NS NGVR+K+I G TGS+  +TY++ITL  I  YG+VIEQDY N                 + NV G+V    T +Y+LC +G+CS W+W  V++ GG+ S  C  +P GA
Sbjct:  153 FSINGVTGLTLDRITIDNSAGDSAGAHNTDAFDIGSSSGITISNANIKNQDDCVAINSGSDIHVTNCQCSGGHGVSIGSVGGRKDNTVKGVVVSGTTIANSDNGVRIKTISGATGSVSDITYENITLKNIAKYGIVIEQDYLNGGPTGKPTTGVPITGVTLKNVAGSVTGSGTEIYVLCGKGSCSGWNWSGVSITGGKKSSSCLNVPSGA 362          
BLAST of FC930928 vs. ExPASy Swiss-Prot
Match: PGLRB_ASPFL (Polygalacturonase B OS=Aspergillus flavus GN=pecB PE=3 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 6.602e-53
Identity = 102/210 (48.57%), Postives = 131/210 (62.38%), Query Frame = 2
Query:    2 FSIDGAKELTLNGVTVDNLDGDSQGGHNTDAFDVGSSNGVYIISPTVHNQDDCLAINSGSNIHFTGAQCTXXXXXXXXXXXXRADNIVDGVTIENCNIKNSMNGVRVKSIYGTTGSIRGVTYKDITLSGITDYGVVIEQDYKNXXXXXXXXXXXXXXXXXINNVHGTVNSGATNVYILCAEGACSNWSWGDVNVQGGRTSEKCKGIPGGA 631
            FS+ G  ++ L  +T+DN DGD+ GGHNTDAFDV  SNGVYI    V NQDDCLAINSG NI FTGA C+            R  N V  V + +  + +S NG+R+K+I G TGS+ GVTY++ITL  I   G+VIE DYKN                 +N V G+V S AT VYILC +G+CS+W+W  V++ GG+ S+KC+ IP GA
Sbjct:  156 FSVQG-NDVHLTDITIDNSDGDNNGGHNTDAFDVSESNGVYITGANVKNQDDCLAINSGENIEFTGATCSGGHGISIGSIGNRDTNTVKNVKVADSTVVDSDNGIRIKTISGATGSVSGVTYENITLKNIKKNGIVIELDYKNGGPTGKPTTGVPITDLTVNGVTGSVASKATPVYILCGKGSCSDWTWKGVSISGGKKSDKCQNIPSGA 364          
The following BLAST results are available for this feature:
BLAST of FC930928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PGLR_PENGR1.321e-7763.81Polygalacturonase OS=Penicillium griseoroseum GN=P... [more]
PGLR2_PENOL3.493e-6254.98Polygalacturonase 2 OS=Penicillium olsonii GN=PG2 ... [more]
PGLR1_SCLSC2.503e-6055.92Endo-polygalacturonase OS=Sclerotinia sclerotiorum... [more]
PGLR2_ASPNG3.740e-5649.52Endopolygalacturonase-2 OS=Aspergillus niger GN=pg... [more]
PGLR1_ASPNG4.135e-5548.78Polygalacturonase-1 OS=Aspergillus niger GN=pgaA P... [more]
PGLR2_ASPTU2.052e-5448.57Polygalacturonase-2 OS=Aspergillus tubingensis GN=... [more]
PGLR1_COLLN2.680e-5450.95Endopolygalacturonase 1 OS=Colletotrichum lindemut... [more]
PGLR_PENJA5.971e-5447.62Polygalacturonase OS=Penicillium janthinellum PE=3... [more]
PGLR_COCCA3.871e-5346.19Polygalacturonase OS=Cochliobolus carbonum GN=PGN1... [more]
PGLRB_ASPFL6.602e-5348.57Polygalacturonase B OS=Aspergillus flavus GN=pecB ... [more]

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Properties
Property NameValue
Genbank descriptionC34110E09EF PostHarvP1 Citrus clementina cDNA clone C34110E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930928 ID=FC930928; Name=FC930928; organism=Citrus clementina; type=EST; length=689bp
CTTCAGTATCGATGGCGCTAAGGAGCTTACTCTCAACGGAGTTACCGTCG
ACAACCTCGATGGTGACAGCCAGGGTGGCCACAACACTGACGCATTCGAC
GTCGGCTCCAGCAACGGTGTCTACATCATCAGCCCTACCGTCCACAACCA
GGATGACTGCCTTGCTATCAACTCCGGCTCGAACATCCACTTTACCGGCG
CTCAGTGCACTGGCGGTCACGGTATCTCCATCGGTTCCGTCGGTGGACGC
GCTGACAACATTGTCGACGGTGTCACCATCGAGAACTGCAACATCAAGAA
CTCCATGAACGGTGTCCGCGTCAAGAGTATCTACGGTACCACCGGTTCCA
TCCGGGGCGTCACCTACAAGGATATCACCCTCTCCGGAATCACCGACTAC
GGTGTTGTCATTGAGCAGGACTACAAGAACGGCAGCCCTACCGGAACCCC
CACCGGCGGTGTCCCCATCACTGGTCTGACCATCAACAACGTCCACGGAA
CTGTCAACAGCGGTGCTACCAACGTCTACATTCTGTGTGCCGAGGGTGCT
TGCTCCAACTGGTCCTGGGGTGATGTCAACGTCCAGGGTGGCCGCACTAG
CGAGAAGTGCAAGGGTATCCCCGGCGGTGCTAAAGTGCTAATAGCACACT
GACAGGTTGAGTCGAGTTGTACAGCTTTTGACTCCTTGC
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