FC930932

Overview
NameFC930932
Unique NameFC930932
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15314 contig Ccv1_Contig15314:5..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHLY_HEVBR (Hevamine-A OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 5.763e-86
Identity = 157/214 (73.36%), Postives = 174/214 (81.31%), Query Frame = 1
Query:   16 MARNSPAIATFVSLLVTLSLIKASQ--GAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            MA+ + AI   + LL+ +SLI +S     GGIAIYWGQNGNEGTLT TC+T KY+YVNIAFLNKFGNGQTP+INLAGHCNPAAGGC +VS+ I+SCQ +GIKVM                DAKNVADYLWNNFLGG SSSRPLG AVLDGIDFDIE GSTL+ DDLAR+LSAYS +GKKVYLTAAPQCPFPDR+LG ALNTGLFDYVWVQFYNN
Sbjct:    1 MAKRTQAI---LLLLLAISLIMSSSHVDGGGIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLDGIDFDIEHGSTLYWDDLARYLSAYSKQGKKVYLTAAPQCPFPDRYLGTALNTGLFDYVWVQFYNN 211          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHIT3_VITVI (Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE=2 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.345e-79
Identity = 151/215 (70.23%), Postives = 165/215 (76.74%), Query Frame = 1
Query:   16 MARNSPAIATFVSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSA---YSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            MAR   +    +SL V L+L++ S  AGGIAIYWGQNGNEGTLT TC TGKY+YVNIAFLNKFGNGQTPEINLAGHCNPA+ GC  VS  I++CQ+RGIKVM                DA+NVA+YLWNNFLGG SSSRPLG AVLDGIDFDIE GSTLH DDLAR LS       RG+KVYLTAAPQCPFPD+  G ALNTGLFDYVWVQFYNN
Sbjct:    1 MARTPQSTPLLISLSV-LALLQTSY-AGGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTPEINLAGHCNPASNGCTSVSTGIRNCQNRGIKVMLSIGGGAGSYSLSSSNDAQNVANYLWNNFLGGQSSSRPLGDAVLDGIDFDIELGSTLHWDDLARALSRIEFQQERGRKVYLTAAPQCPFPDKVPGTALNTGLFDYVWVQFYNN 213          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHIA_ARATH (Acidic endochitinase OS=Arabidopsis thaliana GN=CHIB1 PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 3.036e-75
Identity = 134/198 (67.68%), Postives = 151/198 (76.26%), Query Frame = 1
Query:   61 VTLSLIKASQGA-GGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            ++ SL K S  + GGIAIYWGQNGNEG L++TCATG+YAYVN+AFL KFGNGQTPE+NLAGHCNPAA  C      +K CQSRGIKVM                DAK +ADYLWNNFLGG SSSRPLG AVLDGIDF+IE GS  H DDLAR LS +S RG+K+YLT APQCPFPDR +G+ALNT  FDYVW+QFYNN
Sbjct:   17 ISCSLSKPSDASRGGIAIYWGQNGNEGNLSATCATGRYAYVNVAFLVKFGNGQTPELNLAGHCNPAANTCTHFGSQVKDCQSRGIKVMLSLGGGIGNYSIGSREDAKVIADYLWNNFLGGKSSSRPLGDAVLDGIDFNIELGSPQHWDDLARTLSKFSHRGRKIYLTGAPQCPFPDRLMGSALNTKRFDYVWIQFYNN 214          

HSP 2 Score: 25.7942 bits (55), Expect = 3.036e-75
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 3
Query:  651 PPCQYSSGNT 680
            PPC YSSGNT
Sbjct:  215 PPCSYSSGNT 224          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHIA_TOBAC (Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.652e-66
Identity = 123/203 (60.59%), Postives = 148/203 (72.91%), Query Frame = 1
Query:   43 TFVSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            +F+   + L L      AG I IYWGQNGNEG+L  TCAT  YA VNIAFL  FGNGQ P +NLAGHC+P AG C  +S+ I++CQ++GIKVM                DA+NVA+YLWNN+LGG S++RPLG AVLDGIDFDIE G+T H D+LA+ LS +S + +KVYLTAAPQCPFPD +L  AL+TGLFDYVWVQFYNN
Sbjct:    5 SFLLTALVLFLRALKLEAGDIVIYWGQNGNEGSLADTCATNNYAIVNIAFLVVFGNGQNPVLNLAGHCDPNAGACTGLSNDIRACQNQGIKVMLSLGGGAGSYFLSSADDARNVANYLWNNYLGGQSNTRPLGDAVLDGIDFDIEGGTTQHWDELAKTLSQFSQQ-RKVYLTAAPQCPFPDTWLNGALSTGLFDYVWVQFYNN 206          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHIA_CICAR (Acidic endochitinase OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.856e-63
Identity = 115/198 (58.08%), Postives = 143/198 (72.22%), Query Frame = 1
Query:   58 LVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            L+ +SL+  S  A GIA+YWGQNGNEG+L   C T  Y +VNIAFL+ FGNGQ P+INLAGHC+P+  GC   S  I++CQ++GIKV+                +A  +A+YLWNNFLGGTS+SRPLG AVLDGIDFDIE G   H D+LA+ L+ +S   +KVYL+AAPQCP+PD  L +A+ TGLFDYVWVQFYNN
Sbjct:   11 LLLISLLIKSSNAAGIAVYWGQNGNEGSLQDACNTNNYQFVNIAFLSTFGNGQNPQINLAGHCDPSTNGCTKFSPEIQACQAKGIKVLLSLGGGAGSYSLNSAEEATTLANYLWNNFLGGTSTSRPLGDAVLDGIDFDIESGGQ-HYDELAKALNGFSQ--QKVYLSAAPQCPYPDAHLDSAIQTGLFDYVWVQFYNN 205          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHIA_PHAAN (Acidic endochitinase OS=Phaseolus angularis PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.527e-62
Identity = 117/198 (59.09%), Postives = 137/198 (69.19%), Query Frame = 1
Query:   58 LVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            L+ +S  K S  AGGI++YWGQNGNEG+L   C TG Y YVNIAFL  FG GQTP++NLAGHCNP+   C V SD IK CQS+ IKV+                DA  VA+Y+WNNFLGG SSSRPLG A+LDG+DFDIE G+  H DDLAR L  ++S   ++ LTAAPQCP PD  L  A+ TGLFD VWVQFYNN
Sbjct:   18 LLFISFFKPSH-AGGISVYWGQNGNEGSLADACNTGNYKYVNIAFLFTFGGGQTPQLNLAGHCNPSINNCNVFSDQIKECQSKDIKVLLSLGGASGSYSLTSADDATQVANYIWNNFLGGQSSSRPLGDAILDGVDFDIESGTGEHWDDLARALKGFNS---QLLLTAAPQCPIPDAHLDTAIKTGLFDIVWVQFYNN 211          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHIB_TOBAC (Basic endochitinase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.293e-61
Identity = 117/199 (58.79%), Postives = 139/199 (69.85%), Query Frame = 1
Query:   55 LLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            L + L L+ +   AG I +YWGQ+  EG L  TC +G Y  VNIAFL+ FGN QTP++NLAGHC P++GGC+ ++ +I+ CQS GIK+M                DA+ VADYLWNNFLGG SS RPLG AVLDGIDFDIE G   H   LAR LS +  +GKK+YLTAAPQCPFPD+ L  AL TGLFDYVWVQFYNN
Sbjct:   11 LPIFLLLLTSKVKAGDIVVYWGQDVGEGKLIDTCNSGLYNIVNIAFLSSFGNFQTPKLNLAGHCEPSSGGCQQLTKSIRHCQSIGIKIMLSIGGGTPTYTLSSVDDARQVADYLWNNFLGGQSSFRPLGDAVLDGIDFDIELGQP-HYIALARRLSEHGQQGKKLYLTAAPQCPFPDKLLNGALQTGLFDYVWVQFYNN 208          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHIA_CUCSA (Acidic endochitinase OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.417e-61
Identity = 117/205 (57.07%), Postives = 140/205 (68.29%), Query Frame = 1
Query:   37 IATFVSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            I T +S+   LS I  S  A GIAIYWGQNGNEG+L STCATG Y +VNIAFL+ FG+GQ P +NLAGHCNP   GC  +SD I SC+S+ +KV+                DAK VA+++WN++LGG S SRPLGAAVLDG+DFDIE GS    D LA+ L  +     +V L+AAPQCP PD  L AA+ TGLFD VWVQFYNN
Sbjct:    6 ITTTLSIFFLLSSIFRSSDAAGIAIYWGQNGNEGSLASTCATGNYEFVNIAFLSSFGSGQAPVLNLAGHCNPDNNGCAFLSDEINSCKSQNVKVLLSIGGGAGSYSLSSADDAKQVANFIWNSYLGGQSDSRPLGAAVLDGVDFDIESGSGQFWDVLAQELKNFG----QVILSAAPQCPIPDAHLDAAIKTGLFDSVWVQFYNN 206          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHIE_BETVU (Acidic endochitinase SE2 OS=Beta vulgaris GN=SE2 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.621e-57
Identity = 114/212 (53.77%), Postives = 139/212 (65.57%), Query Frame = 1
Query:   16 MARNSPAIATFVSLLVTLSLIKASQGAGGIAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            MA    ++   +SLL+  S  ++S G+  I IYWGQNG+EG+L  TC +G Y  V +AF+  FGNGQTP +NLAGHC+PA   C  +S  IK+CQ  GIKV+                DA   ADYLWN +LGG SS+RPLG AVLDGIDFDIE G     DDLAR L+ +++  K VYL+AAPQCP PD  L  A+ TGLFDYVWVQFYNN
Sbjct:    1 MAAKIVSVLFLISLLIFASF-ESSHGSQ-IVIYWGQNGDEGSLADTCNSGNYGTVILAFVATFGNGQTPALNLAGHCDPATN-CNSLSSDIKTCQQAGIKVLLSIGGGAGGYSLSSTDDANTFADYLWNTYLGGQSSTRPLGDAVLDGIDFDIESGDGRFWDDLARALAGHNNGQKTVYLSAAPQCPLPDASLSTAIATGLFDYVWVQFYNN 209          
BLAST of FC930932 vs. ExPASy Swiss-Prot
Match: CHI1_RHINI (Chitinase 1 OS=Rhizopus niveus GN=CHI1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.660e-33
Identity = 82/212 (38.68%), Postives = 112/212 (52.83%), Query Frame = 1
Query:   49 VSLLVTLSLIKASQGAGGIAIYWGQNG-----NEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHC------NPAAGGCRVVSDAIKSCQSRGIKVMXXXXXXXXXXXXXXXXDAKNVADYLWNNFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHRDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNN 651
            ++  +T +L   S     +  YWGQN       +G+L S C +G+   + ++FLNKF  G  PEINLA  C      N     C  V   IK+CQS G+KV+                + +  A+ +WN F GGTS +RP   AV+DGID DIE GS+      A F++A  S+G    + AAPQCPFPD  LG+ ++    D+V VQFYNN
Sbjct:   11 IAAFITSTLAAYSSNGVNVMYYWGQNSAGGSNTQGSLVSYCQSGQVDVIILSFLNKFNMGGLPEINLASACEQTFFPNTNLLHCPTVGSDIKTCQSNGVKVLLSLGGAAGSYGFSSDSEGQTFAETIWNLFGGGTSDTRPFDDAVIDGIDLDIEGGSS---TGYAAFVTALRSKG-HFLIGAAPQCPFPDAILGSVIDAVGLDFVNVQFYNN 218          
The following BLAST results are available for this feature:
BLAST of FC930932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CHLY_HEVBR5.763e-8673.36Hevamine-A OS=Hevea brasiliensis PE=1 SV=2[more]
CHIT3_VITVI2.345e-7970.23Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE... [more]
CHIA_ARATH3.036e-7567.68Acidic endochitinase OS=Arabidopsis thaliana GN=CH... [more]
CHIA_TOBAC8.652e-6660.59Acidic endochitinase OS=Nicotiana tabacum PE=1 SV=... [more]
CHIA_CICAR6.856e-6358.08Acidic endochitinase OS=Cicer arietinum PE=2 SV=1[more]
CHIA_PHAAN1.527e-6259.09Acidic endochitinase OS=Phaseolus angularis PE=2 S... [more]
CHIB_TOBAC1.293e-6158.79Basic endochitinase OS=Nicotiana tabacum PE=2 SV=1[more]
CHIA_CUCSA6.417e-6157.07Acidic endochitinase OS=Cucumis sativus PE=1 SV=1[more]
CHIE_BETVU5.621e-5753.77Acidic endochitinase SE2 OS=Beta vulgaris GN=SE2 P... [more]
CHI1_RHINI5.660e-3338.68Chitinase 1 OS=Rhizopus niveus GN=CHI1 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34110F01EF PostHarvP1 Citrus clementina cDNA clone C34110F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930932 ID=FC930932; Name=FC930932; organism=Citrus clementina; type=EST; length=680bp
GGCATAATTGCAGAAATGGCCAGAAACTCTCCAGCAATAGCAACATTCGT
CTCCCTGCTGGTCACTCTGTCATTGATCAAAGCCTCTCAAGGCGCCGGCG
GCATCGCAATCTATTGGGGCCAAAACGGCAACGAGGGTACCCTCACTTCA
ACCTGTGCCACAGGCAAATATGCTTATGTCAACATAGCTTTCCTGAACAA
GTTTGGCAACGGCCAGACCCCTGAAATTAACCTTGCCGGCCACTGCAACC
CTGCAGCCGGTGGCTGCAGAGTCGTCAGCGACGCAATCAAGAGTTGTCAG
AGCCGAGGCATCAAAGTTATGCTTTCCCTCGGAGGTGGGGTTGGTAGCTA
CTCTTTGGCTTCTGTAGCTGATGCCAAGAATGTAGCTGATTACTTGTGGA
ACAATTTCTTGGGGGGAACATCAAGTTCAAGGCCATTAGGTGCTGCTGTG
TTGGACGGTATTGATTTTGATATTGAGCAAGGCTCAACTTTGCATCGGGA
TGACCTTGCAAGGTTTCTATCAGCATATAGCAGCCGTGGCAAGAAAGTTT
ACTTAACAGCAGCTCCCCAGTGCCCATTTCCTGATAGGTTTCTGGGTGCT
GCTTTGAACACGGGGCTTTTTGATTATGTATGGGTTCAGTTTTACAACAA
CCACCTTGTCAGTATAGTTCAGGAAATACC
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