FC930938

Overview
NameFC930938
Unique NameFC930938
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930938 vs. ExPASy Swiss-Prot
Match: TYRA1_ARATH (Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT1 PE=1 SV=1)

HSP 1 Score: 418.313 bits (1074), Expect = 2.040e-116
Identity = 198/239 (82.85%), Postives = 218/239 (91.21%), Query Frame = 1
Query:    4 GFGNFGPFLAKTIVRQGHTVLAYSRTDYSDVARKMGVSYFSDADDLCEEHPEVVLLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPQKLFFQHLPPDFDILCTHPMFGPESGKNGWSGLTFVFDRVRVGYNEARRSRCNRFLDIFAREGCQMVEMSCAEHDWHAAGSQFITHTIGRILEKFGLESTPINTKGYETLLKLVENTAGDSFDLYYGLFMYNANAMEQLERLDFAFES 720
            GFGNFG FL KT+V+QGHTVLAYSR+DY+D A K+GVSYFSD DDL EEHPEV++LCTSILSTEKVL+SLPFQRLKRSTLFVDVLSVKEFP+ LF Q LP DFDILCTHPMFGPESGKNGW+ L FVFD+VR+G ++ R+SRCN FLDIFAREGC+MVEMSCAEHDWHAAGSQFITHT+GR+LEK  LESTPI+TKGYETLLKLVENTAGDSFDLYYGLF+YN NAMEQLER   AFES
Sbjct:  371 GFGNFGQFLGKTMVKQGHTVLAYSRSDYTDEAAKLGVSYFSDLDDLFEEHPEVIILCTSILSTEKVLESLPFQRLKRSTLFVDVLSVKEFPRNLFLQTLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGMDDRRKSRCNSFLDIFAREGCRMVEMSCAEHDWHAAGSQFITHTVGRLLEKLSLESTPIDTKGYETLLKLVENTAGDSFDLYYGLFLYNPNAMEQLERFHVAFES 609          

HSP 2 Score: 336.265 bits (861), Expect = 1.019e-91
Identity = 160/241 (66.39%), Postives = 193/241 (80.08%), Query Frame = 1
Query:    4 GFGNFGPFLAKTIVRQGHTVLAYSRTDYSDVARKMGVSYFSDADDLCEEHPEVVLLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPQKLFFQHLPPDFDILCTHPMFGPE--SGKNGWSGLTFVFDRVRVGYNEARRSRCNRFLDIFAREGCQMVEMSCAEHDWHAAGSQFITHTIGRILEKFGLESTPINTKGYETLLKLVENTAGDSFDLYYGLFMYNANAMEQLERLDFAFES 720
            GFGN+G FLA+T++ QGH + A+SR+D+S  AR++GVSYF+D  DLCE HP+VVLLCTSILS E +LK+LPFQRL+R+TLFVDVLSVKEF + L  Q+LP DFDILCTHPMFGP+  S  +GW GL FV+D+VR+G    R SRC  FL+IF REGC+MVEMS  +HD  AA SQFITHT+GR+L    L STPINTKGYE LL L EN  GDSFDLYYGLF+YN N++E LER+D AFE+
Sbjct:   59 GFGNYGQFLAETLISQGHILFAHSRSDHSSAARRLGVSYFTDLHDLCERHPDVVLLCTSILSIENILKTLPFQRLRRNTLFVDVLSVKEFAKTLLLQYLPEDFDILCTHPMFGPQSVSSNHGWRGLRFVYDKVRIGEERLRVSRCESFLEIFVREGCEMVEMSVTDHDKFAAESQFITHTLGRLLGMLKLISTPINTKGYEALLDLAENICGDSFDLYYGLFVYNNNSLEVLERIDLAFEA 299          
BLAST of FC930938 vs. ExPASy Swiss-Prot
Match: TYRA2_ARATH (Arogenate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT2 PE=1 SV=1)

HSP 1 Score: 369.777 bits (948), Expect = 8.319e-102
Identity = 168/239 (70.29%), Postives = 207/239 (86.61%), Query Frame = 1
Query:    4 GFGNFGPFLAKTIVRQGHTVLAYSRTDYSDVARKMGVSYFSDADDLCEEHPEVVLLCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPQKLFFQHLPPDFDILCTHPMFGPESGKNGWSGLTFVFDRVRVGYNEARRSRCNRFLDIFAREGCQMVEMSCAEHDWHAAGSQFITHTIGRILEKFGLESTPINTKGYETLLKLVENTAGDSFDLYYGLFMYNANAMEQLERLDFAFES 720
            GFGNFG FL+KT++R GH ++ +SR+DYSD A  +G  +F +  DLCE+HP+VVLLCTSILSTE VL+S PFQRL+RSTLFVDVLSVKEFP+ LF ++LP +FDILCTHPMFGPESGK+ WSGL FV+D+VR+G   +R+ RC +FL IF  EGC+MVEMSC +HD++AAGSQF+THT+GR+LEK+G+ES+PINTKGYETLL LVENT+ DSF+L+YGLFMYN NA+EQLERLD AFES
Sbjct:   65 GFGNFGQFLSKTLIRHGHDLITHSRSDYSDAANSIGARFFDNPHDLCEQHPDVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVKEFPKALFIKYLPKEFDILCTHPMFGPESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLRIFENEGCKMVEMSCEKHDYYAAGSQFVTHTMGRVLEKYGVESSPINTKGYETLLDLVENTSSDSFELFYGLFMYNPNALEQLERLDMAFES 303          
The following BLAST results are available for this feature:
BLAST of FC930938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TYRA1_ARATH2.040e-11682.85Arogenate dehydrogenase 1, chloroplastic OS=Arabid... [more]
TYRA2_ARATH8.319e-10270.29Arogenate dehydrogenase 2, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC34110F07EF PostHarvP1 Citrus clementina cDNA clone C34110F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930938 ID=FC930938; Name=FC930938; organism=Citrus clementina; type=EST; length=721bp
GGAGGATTTGGAAACTTCGGTCCGTTCCTTGCGAAAACCATAGTTCGTCA
GGGCCACACAGTCTTAGCCTATTCTCGAACTGATTACTCTGATGTAGCTC
GAAAGATGGGGGTTTCATACTTTTCTGATGCAGATGATCTTTGTGAAGAG
CATCCAGAAGTTGTTCTTCTCTGTACATCGATTCTTTCAACAGAAAAAGT
TCTGAAGTCATTGCCATTTCAGAGATTGAAGAGAAGTACTCTGTTCGTTG
ATGTACTCTCAGTAAAAGAGTTCCCACAGAAATTGTTTTTCCAACATTTG
CCACCAGATTTTGATATTCTCTGCACGCATCCTATGTTTGGACCAGAGAG
TGGAAAAAATGGATGGAGTGGTCTTACTTTTGTCTTTGATAGGGTTAGGG
TTGGATATAATGAAGCAAGAAGATCAAGGTGCAATAGGTTTCTGGATATA
TTTGCTCGAGAAGGGTGCCAAATGGTGGAGATGTCTTGCGCAGAGCACGA
TTGGCATGCAGCAGGGTCTCAGTTCATCACTCACACTATTGGAAGAATAC
TGGAGAAGTTCGGGTTGGAATCAACACCAATTAATACAAAAGGCTATGAG
ACTTTGTTGAAGTTGGTGGAGAATACTGCAGGGGATAGCTTTGATCTTTA
TTATGGGTTGTTCATGTACAATGCAAATGCGATGGAGCAGCTAGAAAGAT
TAGATTTTGCTTTTGAATCAT
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