FC930939

Overview
NameFC930939
Unique NameFC930939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13013 contig Ccv1_Contig13013:195..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 395.201 bits (1014), Expect = 1.754e-109
Identity = 185/231 (80.09%), Postives = 203/231 (87.88%), Query Frame = 2
Query:    5 NPVRRSQRGGWRACSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGSP 697
            NPVRRS RG W+ACSFVVVYEVFERMAYYGISSNL +Y+T KLHQGTVKS+NNVTNWVGT W+TPI+GAYV DA LGRY TF I+  IY  GM+VLTLSV++PG+KPP C   N ++C+KAS LQL +FF ALYTLA+GTGGTKPNISTIGADQFD F+PKEK  KLSFFNWWMFSIFFGTLFANTVLVY+QDNVGWTLGYGLPTLGLAISI IF  GTPFYRHK PTGSP
Sbjct:   21 NPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKLPTGSP 251          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.370e-106
Identity = 180/231 (77.92%), Postives = 199/231 (86.15%), Query Frame = 2
Query:    5 NPVRRSQRGGWRACSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGSP 697
            N VRRSQ G W+ACSFVVVYEVFERMAYYGISSNLV+Y+T KLHQGTVKS+NNVTNWVGT W+TPI+GAYVADAH GRY TF I+S IYL+GM +LTLSVSLPGLKPP C   N ++C+KAS +QL +FF ALYTLA+GTGGTKPNISTIGADQFDEF+PK+K HK SFFNWWMFSIFFGT FA TVLVY+QDNVGW +GYGL TLGLA SI IF  GT  YRHK P GSP
Sbjct:   21 NRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKLPMGSP 251          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.162e-69
Identity = 123/232 (53.02%), Postives = 165/232 (71.12%), Query Frame = 2
Query:    2 RNPVRRSQRGGWRACSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGSP 697
            +NP  + + G W+AC F++  E  ER+AYYG+ +NLV YL ++L+QG   +ANNVTNW GT ++TP++GA++ADA+LGRYWT A    IY+ GM +LTLS S+PGLKP  C   N+  C   S+ Q  +FF ALY +A+GTGG KP +S+ GADQFDE +  EK  K SFFNW+ FSI  G L A TVLV+IQ NVGW  G+G+PT+ + I++  FF G+ FYR ++P GSP
Sbjct:   17 KNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNC---NADTCHPNSS-QTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPGGSP 244          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.346e-68
Identity = 120/231 (51.95%), Postives = 161/231 (69.70%), Query Frame = 2
Query:    5 NPVRRSQRGGWRACSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGSP 697
            NP  + + G W+AC F++  E  ER+AYYGI+ NL+ YLT KLHQG V +A NVT W GT ++TP++GA +ADA+ GRYWT A  S IY +GM  LTLS S+P LKP  C       C  A+  Q  +FF  LY +A+GTGG KP +S+ GADQFD+ + +E+  K SFFNW+ FSI  G L ++++LV+IQ+N GW LG+G+PT+ + ++IA FF GTP YR +KP GSP
Sbjct:   35 NPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAEC---IGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSP 262          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.583e-62
Identity = 114/232 (49.14%), Postives = 162/232 (69.83%), Query Frame = 2
Query:    2 RNPVRRSQRGGWRACSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGSP 697
            + P  +++ G W+AC F++  E  ER+AYYG+S+NL+ YL  +++   V ++ +V+NW GT + TP++GA++ADA+LGRYWT A    IY+ GM +LT+S S+PGL P TC    S +   A+  Q  I F ALY +A+GTGG KP +S+ GADQFD+ + KEK  K SFFNW+ F I  G + A++VLV+IQ NVGW  G G+PT+ +AI++  FFAG+ FYR +KP GSP
Sbjct:   18 KKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTP-TC----SGETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQKPGGSP 244          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.548e-56
Identity = 105/230 (45.65%), Postives = 148/230 (64.35%), Query Frame = 2
Query:    8 PVRRSQRGGWRACSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGSP 697
            P  RS+ GGW + + ++  E  ER+   GI  NLV YLT  +H G   +AN VTN++GT ++  ++G ++AD  LGRY T AI + I   G+ +LTLS  +PGL+PP C    S  C++AS +QL + + ALY  A+GTGG K ++S  G+DQFDE EPKE++    FFN + F I  G+L A TVLVY+QD+VG   GYG+    + +++++F AGT  YR KK  GSP
Sbjct:   22 PADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSHCEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAGTNRYRFKKLIGSP 251          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.676e-35
Identity = 74/220 (33.64%), Postives = 124/220 (56.36%), Query Frame = 2
Query:   17 RSQRGGWRACSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINS-QDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFE-PKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFY 670
            +  +GG     F++  E FE++A YG+  N+++YL      G  K  N +  W      TP++GA+++D++LGR+ T +IAS    +GM++L L+  LP +KP  C    +   C  ++  QL + ++A   +++G+GG +P     GADQ D  E PK +    SFF W+  S     L A T +VYIQ+++GW +G+G+P + + I+  +F   +P Y
Sbjct:   19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLY 238          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A4_BOVIN (Solute carrier family 15 member 4 OS=Bos taurus GN=SLC15A4 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.058e-24
Identity = 73/244 (29.92%), Postives = 118/244 (48.36%), Query Frame = 2
Query:   14 RRSQRGGWRA-CSFVVVYEVFERMAYYGISSNLVLYLTNKLHQGTVKSANN-VTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVS---------LPG------LKPPTCKDINSQDCKKASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            RR+   G RA C+ V++ E+ ER A+YG+++NLVL+L           A+  +  ++G  ++    G ++ADA LGR     ++  +YL+GM+   L  +          PG         P C D  ++ C  A         +AL  + +G G  K NI+  GADQ  +  P+       FFNW+ +SI  G + +   + YIQ NV +  GY +P + + ++  +F  G  F+  K P GS
Sbjct:   15 RRTAFAGRRAACAAVLLTELLERAAFYGVTANLVLFLNGTAFGWEGAEASQALLLFMGLTYLVSPFGGWLADARLGRARAILLSLALYLLGMLAFPLLAAPATRSALCGAPGPTNVRNCSAPPCTDTPTRYCAPA-------VLSALALVGLGVGAVKANITPFGADQVKDRGPEATRR---FFNWFYWSINLGAIVSLGGIAYIQQNVSFVTGYAIPAVCIGVAFVVFLCGQTFFITKPPDGS 248          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A4_XENLA (Solute carrier family 15 member 4 OS=Xenopus laevis GN=slc15a4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.127e-23
Identity = 72/235 (30.64%), Postives = 120/235 (51.06%), Query Frame = 2
Query:   41 ACSFVVVYEVFERMAYYGISSNLVLYLTNKLH--QGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDIN---SQDCKKASTLQ------------LGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            AC+ V++ E+ ER+A+YGI+SNLVL+L  ++   +GT  S   +     T  V+P  G ++ADA LGR++    +  +YL+GM++  + VS  G +   C DI     ++C +++                   F  L  + +G G  K NI+  GADQ  +  P+       FFNW+ +SI  G + +   + Y+Q NV + +GY +P + + +S  +F  G   +  K   GS
Sbjct:   33 ACAAVLLSELLERVAFYGITSNLVLFLNGQIFGWEGTQASQALLLFMGITYLVSPFAG-WLADALLGRFYVILGSMVLYLLGMLLFPM-VSYSGTRTAFCGDIQWAQIENCSRSNASSDDTCPEPSRRYCAPALFLGLIIVGLGVGSVKANITPFGADQVKDRGPEATRR---FFNWFYWSINLGAIISLGGVAYVQQNVEFLIGYIIPAVCIGVSFLVFLCGKTVFVTKPADGS 262          
BLAST of FC930939 vs. ExPASy Swiss-Prot
Match: S15A4_HUMAN (Solute carrier family 15 member 4 OS=Homo sapiens GN=SLC15A4 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23
Identity = 68/225 (30.22%), Postives = 113/225 (50.22%), Query Frame = 2
Query:   41 ACSFVVVYEVFERMAYYGISSNLVLYLTNK--LHQGTVKSANNVTNWVGTIWVTPIVGAYVADAHLGRYWTFAIASCIYLMGMIVLTLSVSLPGLKPPTCKDINSQDCKK-----ASTLQLGIFFAALYTLAVGTGGTKPNISTIGADQFDEFEPKEKAHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYGLPTLGLAISIAIFFAGTPFYRHKKPTGS 694
            AC  V++ E+ ER A+YGI+SNLVL+L       +G  +++  +  ++G  ++    G ++ADA LGR     ++  +YL+GM+   L ++ P  +   C      +C       A+       FA L  + +G    K NI+  GADQ  +  P+       FFNW+ +SI  G + +   + YIQ NV +  GY +PT+ + ++  +F  G   +  K P GS
Sbjct:   36 ACGAVLLTELLERAAFYGITSNLVLFLNGAPFCWEGA-QASEALLLFMGLTYLGSPFGGWLADARLGRARAILLSLALYLLGMLAFPL-LAAPATRAALCGSARLLNCTAPGPDAAARCCSPATFAGLVLVGLGVATVKANITPFGADQVKDRGPEATRR---FFNWFYWSINLGAILSLGGIAYIQQNVSFVTGYAIPTVCVGLAFVVFLCGQSVFITKPPDGS 255          
The following BLAST results are available for this feature:
BLAST of FC930939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PTR3A_ARATH1.754e-10980.09Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR3B_ARATH2.370e-10677.92Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR1_ARATH5.162e-6953.02Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR2_ARATH3.346e-6851.95Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH3.583e-6249.14Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
CHL1_ARATH8.548e-5645.65Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR2X_ARATH1.676e-3533.64Probable peptide transporter At1g52190 OS=Arabidop... [more]
S15A4_BOVIN5.058e-2429.92Solute carrier family 15 member 4 OS=Bos taurus GN... [more]
S15A4_XENLA1.127e-2330.64Solute carrier family 15 member 4 OS=Xenopus laevi... [more]
S15A4_HUMAN3.279e-2330.22Solute carrier family 15 member 4 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC34110F08EF PostHarvP1 Citrus clementina cDNA clone C34110F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930939 ID=FC930939; Name=FC930939; organism=Citrus clementina; type=EST; length=698bp
AAGGAACCCTGTTCGCAGATCCCAGCGTGGTGGATGGAGAGCCTGCTCCT
TTGTTGTTGTATATGAGGTGTTTGAACGTATGGCCTATTATGGGATATCG
TCAAATTTGGTGCTGTATTTGACAAACAAGCTGCATCAGGGCACTGTGAA
GTCGGCTAACAACGTCACCAACTGGGTTGGCACCATTTGGGTCACTCCCA
TTGTGGGCGCTTATGTTGCCGATGCCCATCTCGGCCGCTACTGGACCTTC
GCCATCGCTTCTTGTATTTACCTCATGGGGATGATTGTACTAACGCTATC
AGTGTCATTACCTGGGTTGAAACCTCCTACGTGCAAAGATATTAACAGTC
AAGACTGTAAGAAGGCTTCAACATTACAATTAGGGATCTTCTTTGCTGCA
CTCTACACACTGGCTGTGGGAACTGGAGGAACCAAGCCCAACATCTCGAC
GATAGGAGCGGACCAATTTGATGAATTTGAGCCCAAGGAGAAGGCCCATA
AGCTCTCCTTCTTCAACTGGTGGATGTTTAGCATCTTCTTTGGGACACTC
TTTGCCAATACAGTGCTTGTCTACATACAAGACAATGTGGGCTGGACCTT
GGGTTATGGGCTTCCGACACTCGGTCTTGCGATATCCATTGCGATTTTCT
TTGCTGGCACACCCTTCTACAGGCACAAGAAGCCCACAGGAAGCCCAT
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