FC930940

Overview
NameFC930940
Unique NameFC930940
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:40..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.295e-61
Identity = 92/101 (91.09%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ++T+KIIAEYIWIGGSG+D+RSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH  AK F
Sbjct:   14 DTTEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIF 114

HSP 2 Score: 57.7658 bits (138), Expect = 2.295e-61
Identity = 25/30 (83.33%), Postives = 25/30 (83.33%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFSH  VVAEEPWYGIEQEYTLL  DV W
Sbjct:  112 KIFSHPDVVAEEPWYGIEQEYTLLQKDVNW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 2.993e-61
Identity = 95/101 (94.06%), Postives = 99/101 (98.02%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            +STDKIIAEYIW+GGSGMDMRSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHA AK F
Sbjct:   14 DSTDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKVF 114

HSP 2 Score: 52.373 bits (124), Expect = 2.993e-61
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            K+FS+  V AE PWYGIEQEYTLL  DVKW
Sbjct:  112 KVFSNPDVAAEVPWYGIEQEYTLLQKDVKW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.128e-60
Identity = 92/101 (91.09%), Postives = 99/101 (98.02%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            E+T+KIIAEYIWIGGSG+D+RSKARTLPGPV+DPS+LPKWNYDGSSTGQAPGEDSEVI+YPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHA AK F
Sbjct:   14 ETTEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 114

HSP 2 Score: 54.6842 bits (130), Expect = 1.128e-60
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFSH  VVAE PWYGIEQEYTLL  D+ W
Sbjct:  112 KIFSHPDVVAEVPWYGIEQEYTLLQKDINW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.917e-60
Identity = 93/101 (92.08%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            +ST+KIIAEYIWIGGSGMD+RSKARTL GPV+DP+KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHA AK F
Sbjct:   14 DSTEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIF 114

HSP 2 Score: 54.6842 bits (130), Expect = 1.917e-60
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFS+  VVAEEPWYGIEQEYTLL  D+ W
Sbjct:  112 KIFSNPDVVAEEPWYGIEQEYTLLQRDINW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 3.259e-60
Identity = 93/101 (92.08%), Postives = 99/101 (98.02%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            E+TDKIIAEYIWIGGSG+DMRSKARTLPGPVSDPS+LPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFRRG+NILV+CDAYTPAGEPIPTNKRHA AK F
Sbjct:   14 ETTDKIIAEYIWIGGSGLDMRSKARTLPGPVSDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRRGSNILVICDAYTPAGEPIPTNKRHAAAKVF 114

HSP 2 Score: 53.1434 bits (126), Expect = 3.259e-60
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            K+FSH  VVAE PWYGIEQEYTLL  +V W
Sbjct:  112 KVFSHPDVVAEVPWYGIEQEYTLLQKEVNW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA3_PHAVU (Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=Gln-gamma PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 4.627e-59
Identity = 88/101 (87.13%), Postives = 95/101 (94.06%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            +ST+++IAEYIW+GGSGMDMRSKARTL GPV DPSKLPKWNYDGSSTGQAPG+DSEVILYPQ IF+DPFRRGNNILVMCDAYTPAGEPIPTNKRH  AK F
Sbjct:   14 DSTERVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQTIFRDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIF 114

HSP 2 Score: 56.225 bits (134), Expect = 4.627e-59
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFS+ +VVAEEPWYGIEQEYTLL  DV+W
Sbjct:  112 KIFSNPEVVAEEPWYGIEQEYTLLQKDVQW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.627e-59
Identity = 91/101 (90.10%), Postives = 98/101 (97.03%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ++T+KIIAEYIWIGGSGMD+RSKARTLPGPV+DPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKR++ AK F
Sbjct:   14 DTTEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIF 114

HSP 2 Score: 51.9878 bits (123), Expect = 4.627e-59
Identity = 22/30 (73.33%), Postives = 23/30 (76.67%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFS  +V AEEPWYGIEQEYTLL  D  W
Sbjct:  112 KIFSSPEVAAEEPWYGIEQEYTLLQKDTNW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.025e-58
Identity = 91/101 (90.10%), Postives = 99/101 (98.02%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ++++KIIAEYIW+GGSGMDMRSKARTLPGPV+DPSKLPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHA A+ F
Sbjct:   14 DNSEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAEIF 114

HSP 2 Score: 49.2914 bits (116), Expect = 1.025e-58
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            +IF++  V+AE PWYGIEQEYTLL  DV W
Sbjct:  112 EIFANPDVIAEVPWYGIEQEYTLLQKDVNW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.337e-58
Identity = 88/101 (87.13%), Postives = 97/101 (96.04%), Query Frame = 2 
Query:  134 ESTDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            ++T+KIIAEYIW+GGSG+D+RSKARTL GPV+DPSKLPKWNYDGSSTGQAPG+DSEVIL+PQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKRHA AK F
Sbjct:   14 DTTEKIIAEYIWVGGSGVDLRSKARTLSGPVNDPSKLPKWNYDGSSTGQAPGKDSEVILWPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHAAAKIF 114

HSP 2 Score: 55.4546 bits (132), Expect = 1.337e-58
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFSH  VVAEEPW+GIEQEYTLL  D+ W
Sbjct:  112 KIFSHPDVVAEEPWFGIEQEYTLLQKDIHW 141
[Close]
BLAST of FC930940 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.743e-58
Identity = 91/99 (91.92%), Postives = 93/99 (93.94%), Query Frame = 2 
Query:  140 TDKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAPAKNF 436
            T+KIIAEYIWIGGSGMD+RSKARTL GPVSDP KLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCD YTPAGEPIPTNKRH  AK F
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVSDPHKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDTYTPAGEPIPTNKRHNAAKIF 114

HSP 2 Score: 53.9138 bits (128), Expect = 1.743e-58
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 3 
Query:  429 KIFSHSQVVAEEPWYGIEQEYTLLHXDVKW 518
            KIFSH +V+AEE WYGIEQEYTLL   VKW
Sbjct:  112 KIFSHPEVLAEETWYGIEQEYTLLQNSVKW 141
The following BLAST results are available for this feature:
BLAST of FC930940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA_VIGAC2.295e-6191.09Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLN11_ARATH2.993e-6194.06Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLNA1_MEDSA1.128e-6091.09Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA_NICPL1.917e-6092.08Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA1_LOTJA3.259e-6092.08Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA3_PHAVU4.627e-5987.13Glutamine synthetase N-1 OS=Phaseolus vulgaris GN=... [more]
GLNA4_MAIZE4.627e-5990.10Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLN12_ARATH1.025e-5890.10Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA_LUPLU1.337e-5887.13Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA2_VITVI1.743e-5891.92Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]

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Properties
Property NameValue
Genbank descriptionC34110F09EF PostHarvP1 Citrus clementina cDNA clone C34110F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930940 ID=FC930940; Name=FC930940; organism=Citrus clementina; type=EST; length=518bp
GAAGTCTCTGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATT
ACCAGTTTCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCT
CTGCTCTCAGATCTCCTTAACTTTAACCTCTCAGAATCCACTGACAAGAT
CATCGCTGAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCA
AAGCAAGGACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAG
TGGAATTATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGA
AGTGATCCTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCA
ACAATATTCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATT
CCAACAAACAAAAGACATGCGCCTGCCAAAAATTTTCAGCCATTCTCAAG
TTGTGGCTGAAGAACCATGGTATGGTATTGAGCAGGAATACACCTTACTG
CACAANGATGTTAAATGG
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