FC930943

Overview
NameFC930943
Unique NameFC930943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig273 contig Ccv1_Contig273:285..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930943 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 6.048e-97
Identity = 170/236 (72.03%), Postives = 198/236 (83.90%), Query Frame = 1
Query:    1 NFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCREARLNTCASQFSQKVTAKTNPNDIEWNSGKNPISIEGVQVFAMYLQEAKKLVLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFA 708
            NFI PDWDMFQSTHPCAEFHAASRAISGGPIY+SDCVGKH+F LLKRL +P+GSILRCEYYALPTRD LF DPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCRE R N C S+    +TA T+P D+EWNSG +PISI  V+ FA++L ++KKL+LS   +++E++LEPF FELITVS V  + G    SV+FAPIGLVNMLNT GAI+SL Y+D+  SVE+GV G+GE RV+A
Sbjct:  511 NFIQPDWDMFQSTHPCAEFHAASRAISGGPIYISDCVGKHDFDLLKRLVLPNGSILRCEYYALPTRDRLFEDPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCRETRRNQCFSECVNTLTATTSPKDVEWNSGSSPISIANVEEFALFLSQSKKLLLSGLNDDLELTLEPFKFELITVSPVVTIEGN---SVRFAPIGLVNMLNTSGAIRSLVYNDE--SVEVGVFGAGEFRVYA 741          
BLAST of FC930943 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 345.51 bits (885), Expect = 1.647e-94
Identity = 162/236 (68.64%), Postives = 190/236 (80.51%), Query Frame = 1
Query:    1 NFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCREARLNTCASQFSQKVTAKTNPNDIEWNSGKNPISIEGVQVFAMYLQEAKKLVLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFA 708
            NFIHPDWDMFQSTHPCAEFHAASRAISGGP+YVSDCVG HNF LLK   +PDGSILRC++YALPTRDCLF DPLH+GKTMLKIWNLNKY GV+G FNCQGGGWC E R N  AS+FS  VT   +P DIEW +GK P+ I+GV VFA+Y  + KKL L K  + +E+SLEPFSFEL+TVS + +    +   +QFAPIGLVNMLN+GGA+QSL +DD  + V+IGV+G GE+ VFA
Sbjct:  524 NFIHPDWDMFQSTHPCAEFHAASRAISGGPVYVSDCVGNHNFKLLKSFVLPDGSILRCQHYALPTRDCLFEDPLHNGKTMLKIWNLNKYAGVLGLFNCQGGGWCPETRRNKSASEFSHAVTCYASPEDIEWCNGKTPMDIKGVDVFAVYFFKEKKLSLMKCSDRLEVSLEPFSFELMTVSPLKVF---SKRLIQFAPIGLVNMLNSGGAVQSLEFDDSASLVKIGVRGCGELSVFA 756          
BLAST of FC930943 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.562e-81
Identity = 146/239 (61.09%), Postives = 183/239 (76.57%), Query Frame = 1
Query:    4 FIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCREARLNTCASQFSQKVTAKTNPNDIEWNSGKNPISIEGVQVFAMYLQEAKKLVLSKPYENIEISLEPFSFELITVSAVTLLPGGTSP--SVQFAPIGLVNMLNTGGAIQSL--SYDDDENSVEIGVKGSGEMRVFA 708
            FIHPDWDMFQSTHPCA FHAASRA+SGGP+YVSD VG H+F LL+RL++PDG+ILRCE YALPTRDCLFADPLHDGKTMLKIWN+NK++GV+GAFNCQGGGW REAR N CA+ FS  VTA+ +P D+EW+ G       G   FA+Y  EA+KL L +  E++E++LEPF++EL+ V+ V  +    SP   + FAPIGL NMLN GGA+Q    +  D + + E+ VKG+GEM  ++
Sbjct:  510 FIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILRCERYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMCAAGFSVPVTARASPADVEWSHGGG-----GGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVAPVRAI---VSPELGIGFAPIGLANMLNAGGAVQGFEAARKDGDVAAEVAVKGAGEMVAYS 740          
BLAST of FC930943 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.480e-55
Identity = 108/235 (45.96%), Postives = 149/235 (63.40%), Query Frame = 1
Query:    7 IHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCREARLNTCASQFSQKVTAKTNPNDIEWNSGKNPISIEGVQVFAMYLQEAKKL-VLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFA 708
            I PDWDMFQS H CA+FHA SRAI GGPIYVSD VG H+F L+K+L  PDG+I +C Y+ LPTRDCLF +PL D  T+LKIWN NKY GVIGAFNCQG GW    +      +  + +    +  ++EW+  +    +   + + +YL +A++L +++   E I+ +++P +FEL +   VT L GG    ++FAPIGL NM N+GG +  L Y    N  +I VKG G    ++
Sbjct:  581 IQPDWDMFQSDHVCAKFHAGSRAICGGPIYVSDNVGSHDFDLIKKLVFPDGTIPKCIYFPLPTRDCLFKNPLFDHTTVLKIWNFNKYGGVIGAFNCQGAGWDPIMQKFRGFPECYKPIPGTVHVTEVEWDQKEETSHLGKAEEYVVYLNQAEELSLMTLKSEPIQFTIQPSTFELYSFVPVTKLCGG----IKFAPIGLTNMFNSGGTVIDLEYVG--NGAKIKVKGGGSFLAYS 809          
BLAST of FC930943 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.712e-54
Identity = 108/230 (46.96%), Postives = 143/230 (62.17%), Query Frame = 1
Query:    4 FIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCREARLNTCASQFSQKVTAKTNPNDIEWNSGKNPISIEGVQVFAMYLQEAKKLVLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGE 693
            F+ PDWDMF S HP AE+HA++RAISGGP+YVSD  GKHNF LL++L +PDGSILR      PTRDCLFADP  DG ++LKIWN+NKYTGV+G +NCQG  W    R N      +  +T      D+   S  +          A+Y Q   +L++     ++ +SL+    E+ TVS ++ L  G    V FAPIGLVNM N+GGAI+ L Y+ ++  V + VKG G+
Sbjct:  473 FMQPDWDMFHSVHPAAEYHASARAISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGVSLLKIWNMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWNGDCAVYSQSRGELIVMPYNVSLPVSLKIREHEIFTVSPISHLVDG----VSFAPIGLVNMYNSGGAIEGLRYEAEKMKVVMEVKGCGK 698          
BLAST of FC930943 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.841e-51
Identity = 110/242 (45.45%), Postives = 155/242 (64.05%), Query Frame = 1
Query:    7 IHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGK--HNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCREARLNTCASQFSQKVTAKTNPNDIEWNSGKNPISIEGVQV-----FAMYLQEAKK-LVLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENSVEIGVKGSGEMRVFA 708
            I PDWDMFQS H CAE+HAASRAI GGP+Y+SD +GK  HNF L+K+L+  DG+I RC +YALPTRD LF +PL D +++LKI+N NK+ GVIG FNCQG GW  E        +    V+   + +DIEW+  +NP    G QV     + +Y Q++++ L ++   E ++I+LEP +F+L++   VT L    S  V+F P+GL+NM N  G +Q +    D NS+ + VKG G    ++
Sbjct:  597 IQPDWDMFQSDHVCAEYHAASRAICGGPVYLSDHLGKASHNFDLIKKLAFFDGTIPRCVHYALPTRDSLFKNPLFDKESILKIFNFNKFGGVIGTFNCQGAGWSPEEHRFKGYKECYTTVSGTVHVSDIEWD--QNP-EAAGSQVTYTGDYLVYKQQSEEILFMNSKSEAMKITLEPSAFDLLSFVPVTEL---VSSGVRFVPLGLINMFNCVGTVQDMKVTGD-NSIRVDVKGEGRFMAYS 831          
BLAST of FC930943 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.157e-47
Identity = 99/237 (41.77%), Postives = 143/237 (60.34%), Query Frame = 1
Query:    4 FIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCREARLNTCASQFSQKVTAKTNPNDIEWNSGKNPISIEGVQVFAMYLQEAKKLVLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSLSYDDDENS--VEIGVKGSGEMRVFA 708
            F+ PDWDMF S HP AE+HAA+RA+ G  IYVSD  G+H+F LL++L + DGSILR +    PT DC F+DP+ D K++LKIWNLN++TGVIG FNCQG GWC+  +      Q    ++     ND+ +          G  +   +L+   +LV      ++ ++L P  +E+ TV  V     G+    +FAP+GL+ M N+GGAI SL YDD+     V + ++GSG + V++
Sbjct:  479 FMQPDWDMFHSLHPMAEYHAAARAVGGCAIYVSDKPGQHDFNLLRKLVLRDGSILRAKLPGRPTSDCFFSDPVRDNKSLLKIWNLNEFTGVIGVFNCQGAGWCKNEKRYLIHDQEPGTISGCVRTNDVHYLHKVAAFEWTGDSIVYSHLR--GELVYLPKDTSLPVTLMPREYEVFTVVPVKEFSDGS----KFAPVGLMEMFNSGGAIVSLRYDDEGTKFVVRMKLRGSGLVGVYS 709          
BLAST of FC930943 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 9.791e-47
Identity = 92/212 (43.40%), Postives = 132/212 (62.26%), Query Frame = 1
Query:    4 FIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSDCVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGWCREARLNTCASQFSQKVTAKTNPNDIEWNSGKNPISIEGVQVFAMYLQEAKKLVLSKPYENIEISLEPFSFELITVSAVTLLPGGTSPSVQFAPIGLVNMLNTGGAIQSL 639
            F+ PDWDMF S HP AE+HAA+RA+ G  IYVSD  G HNF LL++L +PDGS+LR +    PTRDCLFADP  DG ++LKIWN+NK+TG++G FNCQG GWC+E + N         +T     +D +  S        G  +  +Y   + ++V      +I ++L+   +EL  +S +  +    + ++ FAPIGLV+M N+ GAI+S+
Sbjct:  475 FMQPDWDMFHSLHPTAEYHAAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAKLPGRPTRDCLFADPARDGISLLKIWNMNKFTGIVGVFNCQGAGWCKETKKNQIHDTSPGTLTGSIRADDADLISQVAGEDWSGDSI--VYAYRSGEVVRLPKGASIPLTLKVLEYELFHISPLKEI----TENISFAPIGLVDMFNSSGAIESI 680          
BLAST of FC930943 vs. ExPASy Swiss-Prot
Match: AGAL_SULSO (Alpha-galactosidase OS=Sulfolobus solfataricus GN=galS PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    1 NFIHPDWDMFQSTHPCAEFHAASRAISGGPIYVSD-CVGKHNFPLLKRLSMPDGSILRCEYYALPTRDCLFADPLHDGKTMLKIWNLNKYTGVIGAFNCQGG 303
            + ++PD+DMF S  P A+ H  +R  SGGPIY++D    + N  LL+   +P+G ++R +  AL T D LF DPL + + +LK+    K    I  FN   G
Sbjct:  450 HIVYPDYDMFMSYDPYAKVHLVARVFSGGPIYITDRHPERTNIELLRMAVLPNGEVIRVDEPALITEDLLFKDPLRE-RVLLKLKGKVKGYNAIAFFNLNSG 550          
The following BLAST results are available for this feature:
BLAST of FC930943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RFS5_ARATH6.048e-9772.03Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA1.647e-9468.64Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS_ORYSJ3.562e-8161.09Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
STSYN_PEA7.480e-5545.96Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
RFS6_ARATH3.712e-5446.96Probable galactinol--sucrose galactosyltransferase... [more]
RFS4_ARATH3.841e-5145.45Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH1.157e-4741.77Probable galactinol--sucrose galactosyltransferase... [more]
RFS2_ARATH9.791e-4743.40Probable galactinol--sucrose galactosyltransferase... [more]
AGAL_SULSO2.691e-1238.24Alpha-galactosidase OS=Sulfolobus solfataricus GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34110F12EF PostHarvP1 Citrus clementina cDNA clone C34110F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930943 ID=FC930943; Name=FC930943; organism=Citrus clementina; type=EST; length=710bp
AACTTCATTCACCCAGATTGGGACATGTTCCAATCTACTCACCCTTGTGC
CGAGTTCCATGCTGCTTCTAGGGCAATTTCCGGCGGTCCTATTTACGTTT
CCGACTGTGTCGGAAAACACAACTTCCCACTGCTCAAGCGCTTGTCGATG
CCTGATGGGTCTATTCTCCGGTGCGAATACTACGCACTTCCGACTAGAGA
CTGCCTCTTTGCTGACCCTCTCCATGATGGCAAGACCATGCTCAAAATCT
GGAACCTGAACAAGTACACTGGAGTTATTGGGGCATTTAACTGCCAAGGA
GGAGGCTGGTGCAGGGAAGCCCGACTCAACACATGTGCCTCACAATTTTC
ACAAAAGGTGACAGCCAAGACCAACCCAAACGACATTGAATGGAACAGTG
GCAAGAACCCAATTTCCATTGAAGGGGTTCAAGTCTTTGCCATGTACTTG
CAAGAAGCCAAGAAGCTCGTTCTCTCCAAGCCATATGAAAACATTGAGAT
ATCATTGGAGCCATTCAGTTTTGAGCTCATCACTGTGTCTGCTGTGACTC
TGCTGCCTGGAGGAACATCGCCATCCGTGCAGTTTGCTCCCATTGGGCTG
GTGAACATGCTCAACACCGGCGGCGCAATCCAGTCTTTGTCCTACGATGA
TGATGAGAATTCAGTGGAAATTGGAGTGAAGGGAAGTGGTGAAATGAGAG
TCTTTGCTTC
back to top