FC930944
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 2.058e-54 Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 2 Query: 371 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 ++G TEHLGLPVFNSVAEAKAETKANASVIYVPPPF LDLVVCITEGIPQHDMV+VKAALN+QSKTRLIGP +C++ + G Sbjct: 76 KKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPG 175 HSP 2 Score: 102.449 bits (254), Expect = 2.058e-54 Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 3 Query: 183 LSTSAAPAAHSRYYGSSAAAS-QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 L ++A+ H+R + ++AAA+ PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGG Sbjct: 12 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGG 79
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 4.489e-51 Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 2 Query: 371 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 ++G TEHLGLPVFNSVAEAKA+TKANASVIYVP PF LDL+VCITEGIPQHDMVRVK ALN QSKTRLIGP +C++ + G Sbjct: 91 KKGGTEHLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPG 190 HSP 2 Score: 98.2117 bits (243), Expect = 4.489e-51 Identity = 59/97 (60.82%), Postives = 66/97 (68.04%), Query Frame = 3 Query: 99 MARQALAKLIGSIG--CRRPSTASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 M+RQ +A+LIGS+ RR ST S + S SR + S AVFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGG Sbjct: 1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSFASDPHPPA-AVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGG 94
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2) HSP 1 Score: 125.946 bits (315), Expect = 7.629e-51 Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 2 Query: 371 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 ++G TEHLGLPVFN+VAEAKAETKANASVIYVP PF LDL+VCITEGIPQHDMVRVKAALN QSKTRLIGP +C++ + G Sbjct: 86 KKGGTEHLGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPG 185 HSP 2 Score: 95.1301 bits (235), Expect = 7.629e-51 Identity = 56/100 (56.00%), Postives = 66/100 (66.00%), Query Frame = 3 Query: 99 MARQALAKLIGSI-----GCRRPSTASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 M+RQ + +L+GS+ GC S S++ SR +G++ AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGG Sbjct: 1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTSL---------VQSRSFGTTPPPPA-AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGG 89
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 3.793e-40 Identity = 55/99 (55.56%), Postives = 64/99 (64.65%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 +G +HLGLPVFN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMVRVK L RQ KTRLIGP N +C++ + G Sbjct: 90 KGGKKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIGPNCPGIINPGECKIGIMPG 188 HSP 2 Score: 80.4925 bits (197), Expect = 3.793e-40 Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 3 Query: 231 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 S AS+ +++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG Sbjct: 42 SYTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGG 92
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4) HSP 1 Score: 102.449 bits (254), Expect = 1.424e-39 Identity = 54/99 (54.55%), Postives = 63/99 (63.64%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 +G +HLGLPVFN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMVRVK L RQ TRLIGP N +C++ + G Sbjct: 90 KGGQKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPG 188 HSP 2 Score: 80.8777 bits (198), Expect = 1.424e-39 Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 3 Query: 153 STASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 S++S ++ RL + + S AS+ +++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG Sbjct: 16 SSSSGLAAARLLSRTFLLQQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGG 92
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 6.965e-39 Identity = 55/99 (55.56%), Postives = 63/99 (63.64%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 +G HLGLPVFN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMVRVK L RQ KTRLIGP N +C++ + G Sbjct: 90 KGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPG 188 HSP 2 Score: 78.1814 bits (191), Expect = 6.965e-39 Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 3 Query: 231 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 S AS+ ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG Sbjct: 42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGG 92
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3) HSP 1 Score: 102.834 bits (255), Expect = 9.075e-39 Identity = 54/99 (54.55%), Postives = 63/99 (63.64%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 +G HLGLPVFN+V EAK +T A ASVIYVPPPF + LVVCITEGIPQ DMVRVK L RQ KTRL+GP N +C++ + G Sbjct: 90 KGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPG 188 HSP 2 Score: 77.7962 bits (190), Expect = 9.075e-39 Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 3 Query: 153 STASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 S +S ++ RL + A + S S+ ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG Sbjct: 16 SGSSGLAAARLLSRAFLLQQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGG 92
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 1.280e-37 Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 +G +HL LPVFN+V EAK T ANA+VIYVPPP ++LVVCITEGIPQ DMV+VK LN+Q+KTRLIGP +C++ + G Sbjct: 62 KGGQKHLDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQNKTRLIGPNCPGIIKPGECKIGIMPG 160 HSP 2 Score: 77.7962 bits (190), Expect = 1.280e-37 Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 3 Query: 213 SRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 +R +G +++P+V ++K+T+VICQG TG GTFH++QAIEYGT MVGGV+P KGG Sbjct: 8 ARNFGKRFFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGG 64
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_DROME (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3) HSP 1 Score: 100.138 bits (248), Expect = 1.492e-35 Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 2 Query: 371 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 ++G T+HLGLPVF SVAEAK T +A+VIYVPPP + L+VCITEG+PQHDMV+VK AL QSK+RL+GP E+C++ + G Sbjct: 71 KKGGTQHLGLPVFASVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPG 170 HSP 2 Score: 69.707 bits (169), Expect = 1.492e-35 Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 3 Query: 270 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383 ++RVICQG TGK GTFH++QA+EYGTK+VGG++PKKGG Sbjct: 37 DSRVICQGFTGKQGTFHSQQALEYGTKLVGGISPKKGG 74
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_COXBU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella burnetii GN=sucD PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 1.876e-32 Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 2 Query: 374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670 +G HLGLP+FNSV EA ET A+A++I+VP PF + LVVCITEGIP DM+ VKA L + R+IGP +C++ + G Sbjct: 43 KGGQSHLGLPIFNSVHEAVEETSADATMIFVPAPFCKDSIIEAVDAGVRLVVCITEGIPVLDMLEVKAYLRQHPDVRMIGPNCPGVITPGECKIGIMPG 141 HSP 2 Score: 78.5666 bits (192), Expect = 1.876e-32 Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 3 Query: 252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGLS 389 ++ +DK TRV+CQG TGK GTFH+EQAIEYGT+MVGGVTP KGG S Sbjct: 2 SILIDKETRVLCQGFTGKQGTFHSEQAIEYGTQMVGGVTPGKGGQS 47 The following BLAST results are available for this feature:
BLAST of FC930944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 45
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930944 ID=FC930944; Name=FC930944; organism=Citrus clementina; type=EST; length=682bpback to top |