FC930944

Overview
NameFC930944
Unique NameFC930944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930944_ssr478 microsatellite FC930944_ssr478:478..489. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6281 contig Ccv1_Contig6281:28..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.058e-54
Identity = 67/100 (67.00%), Postives = 75/100 (75.00%), Query Frame = 2
Query:  371 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            ++G TEHLGLPVFNSVAEAKAETKANASVIYVPPPF            LDLVVCITEGIPQHDMV+VKAALN+QSKTRLIGP         +C++ +  G
Sbjct:   76 KKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPG 175          

HSP 2 Score: 102.449 bits (254), Expect = 2.058e-54
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 3
Query:  183 LSTSAAPAAHSRYYGSSAAAS-QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            L ++A+   H+R + ++AAA+  PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGG
Sbjct:   12 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGG 79          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.489e-51
Identity = 64/100 (64.00%), Postives = 72/100 (72.00%), Query Frame = 2
Query:  371 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            ++G TEHLGLPVFNSVAEAKA+TKANASVIYVP PF            LDL+VCITEGIPQHDMVRVK ALN QSKTRLIGP         +C++ +  G
Sbjct:   91 KKGGTEHLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPG 190          

HSP 2 Score: 98.2117 bits (243), Expect = 4.489e-51
Identity = 59/97 (60.82%), Postives = 66/97 (68.04%), Query Frame = 3
Query:   99 MARQALAKLIGSIG--CRRPSTASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            M+RQ +A+LIGS+    RR ST  S   +    S      SR + S       AVFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGG
Sbjct:    1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSFASDPHPPA-AVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGG 94          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 7.629e-51
Identity = 65/100 (65.00%), Postives = 73/100 (73.00%), Query Frame = 2
Query:  371 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            ++G TEHLGLPVFN+VAEAKAETKANASVIYVP PF            LDL+VCITEGIPQHDMVRVKAALN QSKTRLIGP         +C++ +  G
Sbjct:   86 KKGGTEHLGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPG 185          

HSP 2 Score: 95.1301 bits (235), Expect = 7.629e-51
Identity = 56/100 (56.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:   99 MARQALAKLIGSI-----GCRRPSTASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            M+RQ + +L+GS+     GC   S   S++             SR +G++      AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGG
Sbjct:    1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTSL---------VQSRSFGTTPPPPA-AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGG 89          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.793e-40
Identity = 55/99 (55.56%), Postives = 64/99 (64.65%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            +G  +HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGP      N  +C++ +  G
Sbjct:   90 KGGKKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIGPNCPGIINPGECKIGIMPG 188          

HSP 2 Score: 80.4925 bits (197), Expect = 3.793e-40
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 3
Query:  231 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            S  AS+  +++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG
Sbjct:   42 SYTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGG 92          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 1.424e-39
Identity = 54/99 (54.55%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            +G  +HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ  TRLIGP      N  +C++ +  G
Sbjct:   90 KGGQKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPG 188          

HSP 2 Score: 80.8777 bits (198), Expect = 1.424e-39
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  153 STASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            S++S ++  RL +       +     S  AS+  +++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG
Sbjct:   16 SSSSGLAAARLLSRTFLLQQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGG 92          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 6.965e-39
Identity = 55/99 (55.56%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            +G   HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGP      N  +C++ +  G
Sbjct:   90 KGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPG 188          

HSP 2 Score: 78.1814 bits (191), Expect = 6.965e-39
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 3
Query:  231 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            S  AS+  ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG
Sbjct:   42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGG 92          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 9.075e-39
Identity = 54/99 (54.55%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            +G   HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRL+GP      N  +C++ +  G
Sbjct:   90 KGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPG 188          

HSP 2 Score: 77.7962 bits (190), Expect = 9.075e-39
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 3
Query:  153 STASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            S +S ++  RL + A     +     S   S+  ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG
Sbjct:   16 SGSSGLAAARLLSRAFLLQQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGG 92          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.280e-37
Identity = 51/99 (51.52%), Postives = 64/99 (64.65%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            +G  +HL LPVFN+V EAK  T ANA+VIYVPPP             ++LVVCITEGIPQ DMV+VK  LN+Q+KTRLIGP         +C++ +  G
Sbjct:   62 KGGQKHLDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQNKTRLIGPNCPGIIKPGECKIGIMPG 160          

HSP 2 Score: 77.7962 bits (190), Expect = 1.280e-37
Identity = 33/57 (57.89%), Postives = 46/57 (80.70%), Query Frame = 3
Query:  213 SRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            +R +G    +++P+V ++K+T+VICQG TG  GTFH++QAIEYGT MVGGV+P KGG
Sbjct:    8 ARNFGKRFFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGG 64          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCA_DROME (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.492e-35
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  371 EEGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            ++G T+HLGLPVF SVAEAK  T  +A+VIYVPPP             + L+VCITEG+PQHDMV+VK AL  QSK+RL+GP        E+C++ +  G
Sbjct:   71 KKGGTQHLGLPVFASVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPG 170          

HSP 2 Score: 69.707 bits (169), Expect = 1.492e-35
Identity = 28/38 (73.68%), Postives = 36/38 (94.74%), Query Frame = 3
Query:  270 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGG 383
            ++RVICQG TGK GTFH++QA+EYGTK+VGG++PKKGG
Sbjct:   37 DSRVICQGFTGKQGTFHSQQALEYGTKLVGGISPKKGG 74          
BLAST of FC930944 vs. ExPASy Swiss-Prot
Match: SUCD_COXBU (Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Coxiella burnetii GN=sucD PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.876e-32
Identity = 43/99 (43.43%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  374 EGWTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPTALVSSNLEKCRLALCLG 670
            +G   HLGLP+FNSV EA  ET A+A++I+VP PF            + LVVCITEGIP  DM+ VKA L +    R+IGP         +C++ +  G
Sbjct:   43 KGGQSHLGLPIFNSVHEAVEETSADATMIFVPAPFCKDSIIEAVDAGVRLVVCITEGIPVLDMLEVKAYLRQHPDVRMIGPNCPGVITPGECKIGIMPG 141          

HSP 2 Score: 78.5666 bits (192), Expect = 1.876e-32
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 3
Query:  252 AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGLS 389
            ++ +DK TRV+CQG TGK GTFH+EQAIEYGT+MVGGVTP KGG S
Sbjct:    2 SILIDKETRVLCQGFTGKQGTFHSEQAIEYGTQMVGGVTPGKGGQS 47          
The following BLAST results are available for this feature:
BLAST of FC930944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SUCA_ORYSJ2.058e-5467.00Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA1_ARATH4.489e-5164.00Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCA2_ARATH7.629e-5165.00Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA_RAT3.793e-4055.56Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_MOUSE1.424e-3954.55Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_PIG6.965e-3955.56Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_BOVIN9.075e-3954.55Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_DICDI1.280e-3751.52Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_DROME1.492e-3551.00Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCD_COXBU1.876e-3243.43Succinyl-CoA ligase [ADP-forming] subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionC34110G01EF PostHarvP1 Citrus clementina cDNA clone C34110G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930944 ID=FC930944; Name=FC930944; organism=Citrus clementina; type=EST; length=682bp
CGGGGGAGAATCTTTTTCTTCAATATATTTTGGGAAAAAAGAGAGAGACG
AACTCGAGGGAGAAAATCAGCGAATCAGATTAAAGTGAAGTGAATCAAAT
GGCTCGCCAAGCCTTGGCCAAGCTGATCGGCTCGATCGGATGTCGCAGAC
CCTCTACTGCTTCTTCCGTTTCACATTACAGATTATCAACGTCGGCGGCG
CCGGCGGCCCACTCTCGATATTATGGGTCGTCGGCGGCGGCGTCTCAGCC
GGCAGTTTTCGTCGACAAAAACACTCGAGTTATATGCCAAGGCATCACCG
GAAAAAACGGCACGTTCCATACCGAACAAGCCATCGAATACGGCACCAAA
ATGGTGGGTGGCGTGACGCCGAAGAAGGGTGGACTGAGCACTTGGGACTT
CCTGTATTCAACTCGGTTGCTGAAGCTAAGGCTGAAACGAAGGCTAATGC
TTCTGTCATTTATGTTCCTCCGCCATTTGCTGCTGCTGCTATCATGGAGG
CTATGGAGGCTGAGTTGGATCTTGTCGTCTGTATCACCGAAGGAATCCCT
CAACACGATATGGTGCGAGTGAAAGCTGCTCTAAACAGGCAATCTAAAAC
TCGGCTGATTGGTCCCACTGCCCTGGTATCATCAAACCTGGAGAAATGTA
GATTGGCATTATGCCTGGGTATATTCACAAAC
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