FC930949

Overview
NameFC930949
Unique NameFC930949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930949 vs. ExPASy Swiss-Prot
Match: ARR2_ARATH (Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.531e-90
Identity = 175/235 (74.47%), Postives = 192/235 (81.70%), Query Frame = 3
Query:    3 TCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQS-GSVE----EGDRQPKPSEEAD-YSSSANEGNWRTS--XXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVSAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLR 683
            TCL ILE+ML TCLY VTKCNRAE AL +LR NKNG+DIVISDVHMPDMDGFKLLE VGLEMDLPVIMMSADDSK VV+KGVTHGA DYLIKPVRIEALKNIWQHVVRK++NEW   E S GS+E    + DRQ +  E+AD  SSS NEGN R+S                 +S+LKKPRVVWSVELHQQFV+AVNQLG+DKAVPKKILE+MNVPGLTRENVASHLQKYR+YLR
Sbjct:   38 TCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEEVDDQGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLR 272          
BLAST of FC930949 vs. ExPASy Swiss-Prot
Match: ARR1_ARATH (Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 4.317e-90
Identity = 177/247 (71.66%), Postives = 195/247 (78.95%), Query Frame = 3
Query:    3 TCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEE-GDRQPKP------------SEEA--DYSSSANEG-NWRTS----XXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVSAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLR 683
            TCL ILE+MLRTCLYEVTKCNRAE+AL +LR NK+G+DIVISDVHMPDMDGFKLLE VGLEMDLPVIMMSADDSK VV+KGVTHGA DYLIKPVR+EALKNIWQHVVRKR++EW   E SGS+EE G+RQ +              E+A  D SSS NEG NWR+S                    S LKKPRVVWSVELHQQFV+AVNQLG++KAVPKKILELMNVPGLTRENVASHLQKYR+YLR
Sbjct:   47 TCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISDVHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGNNWRSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWSVELHQQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLR 293          
BLAST of FC930949 vs. ExPASy Swiss-Prot
Match: ARR12_ARATH (Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.144e-66
Identity = 135/230 (58.70%), Postives = 161/230 (70.00%), Query Frame = 3
Query:    3 TCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANEGNW---RTSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVSAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLR 683
            TCL+ILE +LR C Y VT  N+A+ AL++LR NKN +D+VISDV MPDMDGFKLLE VGLEMDLPVIM+SA    + VMKGVTHGACDYL+KPVRIE LKNIWQHVVR R +     +  GS   GD++     E   +S  N G     R                 +   KK RVVW+VELH++FV+AVNQLG +KA+PKKIL+LMNV  LTRENVASHLQK+RLYL+
Sbjct:   27 TCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVRSRFD-----KNRGSNNNGDKRDGSGNEGVGNSDPNNGKGNRKRKDQYNEDEDEDRDDNDDSCAQKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLK 251          
BLAST of FC930949 vs. ExPASy Swiss-Prot
Match: ARR11_ARATH (Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.115e-64
Identity = 135/230 (58.70%), Postives = 158/230 (68.70%), Query Frame = 3
Query:    3 TCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANE---GNWRTSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVSAVNQLGID-KAVPKKILELMNVPGLTRENVASHLQKYRLYL 680
            T L+ILEKML+ C YEVT C  A  AL +LR  K+GYDIVISDV+MPDMDGFKLLE VGLE+DLPVIMMS D     VMKGV HGACDYL+KP+R++ LK IWQHV+RK+  E +D+E  G  E G       +EA +     +   G  R                 +S+ KK RVVWS ELH +FV+AVNQ+G D KA PKKIL+LMNVP LTRENVASHLQKYRLYL
Sbjct:   21 TWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVLRKKLQEVRDIEGCG-YEGGADWITRYDEAHFLGGGEDVSFGKKRKDFDFEKKLLQDESDPSSSSSKKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRLYL 249          
BLAST of FC930949 vs. ExPASy Swiss-Prot
Match: ARR10_ARATH (Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.498e-63
Identity = 128/231 (55.41%), Postives = 164/231 (71.00%), Query Frame = 3
Query:    3 TCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRK---RKNEWKDLEQSGSVEEGDRQPKPS-EEADYSSSANEGNWRTSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVSAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLR 683
            TCLRIL+ +L+ C Y VT  N+A+ AL++LR NKN +D+VISDV MPDMDGFKLLE VGLEMDLPVIM+SA    + VMKGV HGACDYL+KPVRIE LKNIWQHVVRK   +KN+      SG+ ++ +R+ K   EE +     N+ +  T+                   KKPRV+W+ ELH +F++AV+ LG+++AVPKKIL+LMNV  LTRENVASHLQK+R+ L+
Sbjct:   27 TCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISDVDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVRKSKLKKNKSNVSNGSGNCDKANRKRKEQYEEEEEEERGNDNDDPTAQ------------------KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 239          
BLAST of FC930949 vs. ExPASy Swiss-Prot
Match: ARR14_ARATH (Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 3.808e-62
Identity = 129/238 (54.20%), Postives = 163/238 (68.49%), Query Frame = 3
Query:    3 TCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGL-EMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQ----------PKPSEEADYSSSANEGNWRTSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVSAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLR 683
            +CL ILEKML   +Y+VT C++A++AL +LR  K+ +D+V+SDVHMP M+G+ LL+QVGL EMDLPVIMMS D     VM G+ HGACDYLIKP+R E LKNIWQHVVR++    K+L  S ++E+               + SEE+       +   + S                S  KK RVVWS+ELHQQFV+AVN+LGIDKAVPK+ILELMNVPGL+RENVASHLQK+RLYL+
Sbjct:   21 SCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDVHMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVVRRKCVMKKELRSSQALEDNKNSGSLETVVVSVSECSEESLMKCRNKKKKKKRSVDRDDNEDDLLLDPGNS--KKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLK 256          
BLAST of FC930949 vs. ExPASy Swiss-Prot
Match: ARR18_ARATH (Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 5.499e-61
Identity = 130/242 (53.72%), Postives = 156/242 (64.46%), Query Frame = 3
Query:    3 TCLRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDL---EQSGSV------------EEGDRQPKPSEEADYSSSANEGNWRTSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVSAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLR 683
            TCLR LE++L  C Y VTK   +  AL+MLR N N +D+VISDV MPD DGFKLLE +GLEMDLPVIM+SA      VMKG+ HGACDYL+KPV ++ L+NIW HVV+K    +  L    +S SV            + GD      EE D   S  +G+                   + T KKPRVVWS ELHQ+FVSAV QLG+DKAVPKKIL+LM++ GLTRENVASHLQKYRLYL+
Sbjct:   28 TCLRKLEELLLRCKYHVTKTMESRKALEMLRENSNMFDLVISDVEMPDTDGFKLLE-IGLEMDLPVIMLSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWHHVVKKNIKSYAKLLPPSESDSVPSASRKRKDKVNDSGDEDDSDREEDDGEGSEQDGD------------------GSGTRKKPRVVWSQELHQKFVSAVQQLGLDKAVPKKILDLMSIEGLTRENVASHLQKYRLYLK 250          
BLAST of FC930949 vs. ExPASy Swiss-Prot
Match: EHD1_ORYSJ (Two-component response regulator EHD1 OS=Oryza sativa subsp. japonica GN=EHD1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.721e-38
Identity = 90/232 (38.79%), Postives = 128/232 (55.17%), Query Frame = 3
Query:    9 LRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPK-----PSEEADYSSSANEGNWRTSXXXXXXXXXXXXXXXTS--TLKKPRVVWSVELHQQFVSAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLR 683
            L ++E +L  C Y+VT       A+  +  N    D+VISD   P  DG  +L++V  +  +P ++M++      VMK V +GA D+L+KPVRIE L NIWQH+ RK+  + K+    G++E+    P       +  A   S+A E +                   T    L K R+ W+ +LH+QF++AVN LG DKAVPKKIL +M V  LTRE VASHLQKYR+ L+
Sbjct:   23 LSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLK 254          
BLAST of FC930949 vs. ExPASy Swiss-Prot
Match: EHD1_ORYSI (Two-component response regulator EHD1 OS=Oryza sativa subsp. indica PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.721e-38
Identity = 90/232 (38.79%), Postives = 128/232 (55.17%), Query Frame = 3
Query:    9 LRILEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGSVEEGDRQPK-----PSEEADYSSSANEGNWRTSXXXXXXXXXXXXXXXTS--TLKKPRVVWSVELHQQFVSAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLR 683
            L ++E +L  C Y+VT       A+  +  N    D+VISD   P  DG  +L++V  +  +P ++M++      VMK V +GA D+L+KPVRIE L NIWQH+ RK+  + K+    G++E+    P       +  A   S+A E +                   T    L K R+ W+ +LH+QF++AVN LG DKAVPKKIL +M V  LTRE VASHLQKYR+ L+
Sbjct:   23 LSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFFPTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGHPPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGEITDIRDLGKSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLK 254          
BLAST of FC930949 vs. ExPASy Swiss-Prot
Match: ARR20_ARATH (Putative two-component response regulator ARR20 OS=Arabidopsis thaliana GN=ARR20 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.903e-37
Identity = 92/225 (40.89%), Postives = 130/225 (57.78%), Query Frame = 3
Query:   18 LEKMLRTCLYEVTKCNRAEIALDMLRTNKNGYDIVISDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDSKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKR--KNEWKDLEQSGSVEEGDRQPKPSEEADYSSSANEGNWRTSXXXXXXXXXXXXXXXTSTLKKPRVVWSVELHQQFVSAVNQLG-IDKAVPKKILELM----NVPGLTRENVASHLQKYR 671
            L+ ++    Y+VTK    E A+  L  NK+  D+VI D HMPD++G   L  +G +MDLPV++MS +  K+ VM+ + +GACD+L+KPV  E +  +W+HV RKR  K+      +SG+VE    +    E+ +   S  EG+  T                 S  KKPR+ W+ ELH +F  AV ++G ++KA PK IL+ M    NV GLTR NVASHLQKYR
Sbjct:   54 LKNLMTQYSYQVTKYESGEEAMAFLMKNKHEIDLVIWDFHMPDINGLDALNIIGKQMDLPVVIMSHEYKKETVMESIKYGACDFLVKPVSKEVIAVLWRHVYRKRMSKSGLDKPGESGTVESDPDEYDDLEQDNLYESNEEGSKNT----------CDHKEEKSPTKKPRMQWTPELHHKFEVAVEKMGSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYR 268          
The following BLAST results are available for this feature:
BLAST of FC930949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ARR2_ARATH2.531e-9074.47Two-component response regulator ARR2 OS=Arabidops... [more]
ARR1_ARATH4.317e-9071.66Two-component response regulator ARR1 OS=Arabidops... [more]
ARR12_ARATH1.144e-6658.70Two-component response regulator ARR12 OS=Arabidop... [more]
ARR11_ARATH3.115e-6458.70Two-component response regulator ARR11 OS=Arabidop... [more]
ARR10_ARATH4.498e-6355.41Two-component response regulator ARR10 OS=Arabidop... [more]
ARR14_ARATH3.808e-6254.20Two-component response regulator ARR14 OS=Arabidop... [more]
ARR18_ARATH5.499e-6153.72Two-component response regulator ARR18 OS=Arabidop... [more]
EHD1_ORYSJ1.721e-3838.79Two-component response regulator EHD1 OS=Oryza sat... [more]
EHD1_ORYSI1.721e-3838.79Two-component response regulator EHD1 OS=Oryza sat... [more]
ARR20_ARATH1.903e-3740.89Putative two-component response regulator ARR20 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34110G06EF PostHarvP1 Citrus clementina cDNA clone C34110G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930949 ID=FC930949; Name=FC930949; organism=Citrus clementina; type=EST; length=727bp
CTACTTGTCTTAGGATCTTGGAAAAGATGCTTAGGACATGTCTTTATGAA
GTTACAAAATGCAATCGAGCAGAGATTGCTTTGGATATGCTTCGAACGAA
CAAGAATGGGTACGATATTGTTATCAGTGATGTTCATATGCCAGATATGG
ATGGATTCAAACTCCTTGAGCAGGTCGGGCTGGAGATGGACCTGCCGGTT
ATCATGATGTCTGCGGATGATAGCAAACAAGTTGTCATGAAAGGTGTTAC
TCACGGTGCTTGTGATTATTTAATTAAGCCAGTTCGAATTGAGGCACTGA
AGAACATATGGCAGCATGTGGTTCGGAAGAGGAAGAACGAGTGGAAGGAC
TTGGAGCAGTCAGGAAGTGTGGAAGAGGGAGATCGGCAACCAAAACCATC
TGAAGAAGCGGATTATTCTTCCTCAGCAAATGAAGGAAATTGGAGAACCT
CAAAGAGGAGGAAAGACGAGGAAGAAGAAATGGAAGAGAGGGATGATACA
TCCACTTTAAAGAAGCCGCGTGTAGTTTGGTCTGTTGAGCTCCATCAACA
GTTTGTGTCTGCCGTTAACCAGCTAGGCATTGACAAGGCTGTTCCTAAGA
AAATTCTGGAGTTGATGAATGTTCCTGGACTTACTAGAGAAAATGTTGCC
AGCCACCTTCAGAAATATCGTCTGTATCTTAGAGACTAAGTGGAGTGTCA
CCGCACAGGGCAATTCATTTATCAGTT
back to top