FC930951

Overview
NameFC930951
Unique NameFC930951
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3047 contig Ccv1_Contig3047:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930951 vs. ExPASy Swiss-Prot
Match: U172_ARATH (UPF0172 protein At5g55940 OS=Arabidopsis thaliana GN=EMB2731 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 8.510e-78
Identity = 142/197 (72.08%), Postives = 165/197 (83.76%), Query Frame = 3
Query:  138 GELKYELSQNAYIKLVLQARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPKGKDRSPVMQLYIRDASKNWKLVGSDGGCQLLTKEPAANAVLSDYISSEKWQXXXXXXXXXXXXXXXWLN 728
            GELKYE+SQNAYIKLVL + +HKTAAVNGVL+GR+SP++D VVEI+DSVPLFHS+L LLP LEISLIMIEEHY AQGL IVGYFHANERFDD+EL  +AKNIG+HI RYFPQ  +LLL+NKKLEAL KGK+RSPVMQL ++DASKNW++VG+DGG +LL KEP+AN VLSDYISSEKW+               WLN
Sbjct:    7 GELKYEISQNAYIKLVLHSLRHKTAAVNGVLVGRISPKDDGVVEISDSVPLFHSNLALLPPLEISLIMIEEHYVAQGLSIVGYFHANERFDDVELCGVAKNIGDHISRYFPQAPILLLNNKKLEALSKGKERSPVMQLCVKDASKNWRVVGADGGSKLLLKEPSANVVLSDYISSEKWKDVTDVDDHLDDVTKDWLN 203          
BLAST of FC930951 vs. ExPASy Swiss-Prot
Match: F158A_RAT (UPF0172 protein FAM158A OS=Rattus norvegicus GN=Fam158a PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 51/129 (39.53%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  135 MGELKYELSQNAYIKLVLQARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPK 521
            MGE+  E+S  AY K+ L A ++  AAVNG+LL   +   + +  + D VPLFHSHL L   LE++L  ++   +  GL + GY+HAN   DD     +A  I   I  +FP   +++LDNKKL   P+
Sbjct:    1 MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATRSGECLC-LTDCVPLFHSHLALSVMLEVALNQVDVWATQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPNAVLIMLDNKKLVTWPR 126          
BLAST of FC930951 vs. ExPASy Swiss-Prot
Match: F158A_MOUSE (UPF0172 protein FAM158A OS=Mus musculus GN=Fam158a PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.527e-18
Identity = 51/129 (39.53%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  135 MGELKYELSQNAYIKLVLQARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPK 521
            MGE+  E+S  AY K+ L A ++  AAVNG+LL   +   + +  + D VPLFHSHL L   LE++L  ++   +  GL + GY+HAN   DD     +A  I   I  +FP+  +++LDNKKL   P+
Sbjct:    1 MGEV--EISARAYGKMCLHASRYPHAAVNGLLLAPATGSGECLC-LTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPRAVLIMLDNKKLVTRPR 126          
BLAST of FC930951 vs. ExPASy Swiss-Prot
Match: F158A_HUMAN (UPF0172 protein FAM158A OS=Homo sapiens GN=FAM158A PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 9.896e-18
Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = 3
Query:  135 MGELKYELSQNAYIKLVLQARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKKLEALPK 521
            MGE+  E+S  AY+K+ L A ++  AAVNG+ L   +P++   + + D VPLFHSHL L   LE++L  ++   +  GL + GY+HAN   +D     +A  I   I  +FP   +++LDN+KL   P+
Sbjct:    1 MGEV--EISALAYVKMCLHAARYPHAAVNGLFLAP-APRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPDAVLIMLDNQKLVPQPR 126          
BLAST of FC930951 vs. ExPASy Swiss-Prot
Match: U172_DROME (UPF0172 protein CG3501 OS=Drosophila melanogaster GN=CG3501 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.597e-15
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  150 YELSQNAYIKLVLQARKHKTAAVNGVLLGRVSPQNDAVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSI-AKNIGNHICRYFPQCAVLLLDNK 500
            Y++S+ AY KL+  A K+   AVNG+LL   + +   V EI D++PLFH  L + P  E++L++I+ H   +GL I GY+ A E F D ++D   A  I + I   F     +++DNK
Sbjct:    4 YKVSERAYAKLIFHAAKYPHQAVNGLLLAEKTSKGSQV-EIVDAIPLFHQCLYVTPMAEVALMLIDAHAEREGLVIAGYYAAPENFYDNQVDKTPAAKIADKIQENFKNACFVVVDNK 120          
BLAST of FC930951 vs. ExPASy Swiss-Prot
Match: CX4NB_MOUSE (Neighbor of COX4 OS=Mus musculus GN=Cox4nb PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 41/124 (33.06%), Postives = 65/124 (52.42%), Query Frame = 3
Query:  153 ELSQNAYIKLVLQARKHKTAAVNGVLLG-RVSPQND------AVVEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKK 503
            +L+  AY K+VL   K+   AVNG+L+  R  P+ +      +     D +PLFH  L L P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A++++DN K
Sbjct:    5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGSHTLFVDCIPLFHGTLALTPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFGDAALIMVDNAK 128          
BLAST of FC930951 vs. ExPASy Swiss-Prot
Match: CX4NB_RAT (Neighbor of COX4 OS=Rattus norvegicus GN=Cox4nb PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = 3
Query:  153 ELSQNAYIKLVLQARKHKTAAVNGVLLG-RVSPQNDAV------VEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKK 503
            +L+  AY K+VL   K+   AVNG+L+  R  P+ +            D +PLFH  L L P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A++++DN K
Sbjct:    5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAERQRPRKEHPPGAGNHTLFVDCIPLFHGTLALTPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDAALIMVDNAK 128          
BLAST of FC930951 vs. ExPASy Swiss-Prot
Match: CX4NB_HUMAN (Neighbor of COX4 OS=Homo sapiens GN=COX4NB PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 40/127 (31.50%), Postives = 65/127 (51.18%), Query Frame = 3
Query:  153 ELSQNAYIKLVLQARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKK 503
            +L+  AY K+VL   K+   AVNG+L+  +  P+ + +             D +PLFH  L L P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A++++DN K
Sbjct:    5 KLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTALIMVDNTK 131          
BLAST of FC930951 vs. ExPASy Swiss-Prot
Match: CX4NB_BOVIN (Neighbor of COX4 OS=Bos taurus GN=COX4NB PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 39/127 (30.71%), Postives = 65/127 (51.18%), Query Frame = 3
Query:  153 ELSQNAYIKLVLQARKHKTAAVNGVLLG-RVSPQNDAV---------VEIADSVPLFHSHLGLLPNLEISLIMIEEHYSAQGLGIVGYFHANERFDDLELDSIAKNIGNHICRYFPQCAVLLLDNKK 503
            +L+  AY K+VL   K+   AV+G+L+  +  P+ + +             D +PLFH  L L P LE++L +I+         I GY+ ANER  D   + +A+ + + I   F   A++++DN K
Sbjct:    5 KLTTQAYCKMVLHGAKYPHCAVDGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPLFHGTLALAPMLEVALTLIDSWCKDNSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFSDTALIMVDNTK 131          
The following BLAST results are available for this feature:
BLAST of FC930951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
U172_ARATH8.510e-7872.08UPF0172 protein At5g55940 OS=Arabidopsis thaliana ... [more]
F158A_RAT1.527e-1839.53UPF0172 protein FAM158A OS=Rattus norvegicus GN=Fa... [more]
F158A_MOUSE1.527e-1839.53UPF0172 protein FAM158A OS=Mus musculus GN=Fam158a... [more]
F158A_HUMAN9.896e-1837.98UPF0172 protein FAM158A OS=Homo sapiens GN=FAM158A... [more]
U172_DROME4.597e-1538.14UPF0172 protein CG3501 OS=Drosophila melanogaster ... [more]
CX4NB_MOUSE1.635e-1233.06Neighbor of COX4 OS=Mus musculus GN=Cox4nb PE=1 SV... [more]
CX4NB_RAT2.135e-1233.06Neighbor of COX4 OS=Rattus norvegicus GN=Cox4nb PE... [more]
CX4NB_HUMAN4.757e-1231.50Neighbor of COX4 OS=Homo sapiens GN=COX4NB PE=1 SV... [more]
CX4NB_BOVIN1.808e-1130.71Neighbor of COX4 OS=Bos taurus GN=COX4NB PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC34110G08EF PostHarvP1 Citrus clementina cDNA clone C34110G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930951 ID=FC930951; Name=FC930951; organism=Citrus clementina; type=EST; length=730bp
AAAGCGTAATTCGGCAAAGAGAGTTCAAGGGAGTCTACAGACACATCATG
ACTATCAGATACTTGTGCGATTGATCGGCGATTCCGATAAATTTTCAGCA
ACCCAGTGATCAGTCACAGAAAAATACGAAAATTATGGGCGAGTTGAAAT
ACGAATTGTCACAAAACGCCTACATAAAGCTAGTGCTACAAGCGCGAAAG
CACAAGACGGCGGCGGTCAACGGAGTCCTTCTGGGGCGAGTCTCTCCTCA
AAACGACGCTGTCGTCGAGATCGCCGACTCCGTCCCTCTCTTTCATTCCC
ACCTGGGCCTTCTCCCCAATCTCGAGATCTCCCTCATCATGATAGAAGAG
CATTATAGCGCTCAGGGTCTTGGCATTGTGGGGTATTTTCATGCAAATGA
GAGGTTTGATGACTTGGAGCTTGATAGCATTGCTAAGAATATTGGCAATC
ACATTTGCCGGTACTTTCCTCAATGTGCTGTTCTCTTGTTAGATAACAAA
AAGCTGGAAGCCTTACCTAAGGGGAAAGACCGGAGTCCTGTTATGCAGCT
TTACATAAGGGATGCATCCAAGAACTGGAAGCTAGTTGGATCTGATGGTG
GCTGTCAATTGCTAACTAAGGAGCCTGCGGCAAATGCTGTTTTAAGCGAT
TATATTTCTTCAGAGAAGTGGCAGGATGTTGTAGATTTTGATGATCACCT
TGATGACATTAGCNAGGACTGGCTGAACCC
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