FC930955

Overview
NameFC930955
Unique NameFC930955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig651 contig Ccv1_Contig651:14..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930955 vs. ExPASy Swiss-Prot
Match: PHAE_PHAVU (Erythroagglutinating phytohemagglutinin OS=Phaseolus vulgaris GN=DLEC1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 58/196 (29.59%), Postives = 82/196 (41.84%), Query Frame = 2 
Query:  182 AVTPSYGYLSLTSDPSPESPDQLPLKKVGRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXXA----VELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPAQSML 739
            A   S G L LT+      P    L  +GR  YS P+  W       A   T+FT  I   PN +  ADG+ FV     S P +                A    VE DT  N +W DP   H+GID+     N  KS+ ++  D   G   +V I YD  TK+L   + Y        ++   ++S+T+  +S+L
Sbjct:   43 ATVSSKGQLRLTNVNDNGEPT---LSSLGRAFYSAPIQIWDNTTGAVAASPTSFTFNID-VPNNSGPADGLAFVLLPVGSQPKDKGGLLGLFNNYKYDSNAHTVAVEFDTLYNVHW-DPKPRHIGIDV-----NSIKSIKTTTWDFVKGENAEVLITYDSSTKLLVASLVYPS------LKTSFIVSDTVDLKSVL 222
The following BLAST results are available for this feature:
BLAST of FC930955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PHAE_PHAVU7.084e-1129.59Erythroagglutinating phytohemagglutinin OS=Phaseol... [more]
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Properties
Property NameValue
Genbank descriptionC34110G12EF PostHarvP1 Citrus clementina cDNA clone C34110G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930955 ID=FC930955; Name=FC930955; organism=Citrus clementina; type=EST; length=740bp
CCTGGCCGGGGAGAGAAGTAGCCCTCAAATTTTCGTCCCAAACAAAATGA
TTTTCCTACTACTCCTTTCAATTTTTCTTCCCAGTGCTTCTTCATCAATC
CCTGTGGATCCACCTGTTAGCTTCTCATTTTCCTCATTCAACCCAAAAAG
TTGTAGCGATGGCAGCCTAATTTGCATGGGCGCAGTGACTCCAAGTTATG
GCTACTTGAGCCTCACATCAGACCCTTCACCAGAATCGCCAGATCAGCTG
CCGCTAAAAAAGGTTGGACGGGTTTTATACAGCCAGCCTGTGACTGCATG
GCCAGCTATGATTAGTACCACCTTCACCATTAGGATCTCACCCTACCCAA
ATACAACGGATTCTGCAGATGGCATGACGTTTGTTTTTGCAACCGATACC
AGCCCTCCAACTGAAAACTCCGCCGGCGGAAATCTTGGACTGAGTAACGG
TGTTTCGCAATTAGCCGTGGAGCTGGACACTTACAAGAACGACTACTGGT
CTGATCCAGATGCTAACCATATGGGCATTGACATAGCAAACTTAACATCG
AATCCAGCCAAGAGTCTCGACAGCTCTGGTATTGATCTCAAAAGTGGAAG
ACCGATCCAGGTTCACATTTATTACGATGGATGGACGAAAATACTCTATG
TTTATGTGGCATATGCGGGGAACCCACTTCAGAAGCTTATTGAAAGACCT
ATCCTCTTGTCAGAAACAATTCCAGCTCAGTCTATGTTGG
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