FC930957

Overview
NameFC930957
Unique NameFC930957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_NEUCR (ATP synthase subunit alpha, mitochondrial OS=Neurospora crassa GN=atp-1 PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 4.702e-70
Identity = 138/161 (85.71%), Postives = 146/161 (90.68%), Query Frame = 2
Query:  125 TGRIASVRAAVAGPLNGVRSYASEAKATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            TGR+A+  AA        R+YA +AKATPTEVSSILEQRIRGV EE+ LAETGRVLSVGDGIARVHGM NVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIV+VPVGPELLGRV+DALGNPIDGKGP+N KEKRRAQLKAPGIL
Sbjct:   19 TGRVAARNAAPVVSAVQARTYA-DAKATPTEVSSILEQRIRGVQEESNLAETGRVLSVGDGIARVHGMANVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVDVPVGPELLGRVIDALGNPIDGKGPINCKEKRRAQLKAPGIL 178          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_KLULA (ATP synthase subunit alpha, mitochondrial OS=Kluyveromyces lactis GN=ATP1 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.129e-58
Identity = 120/159 (75.47%), Postives = 134/159 (84.28%), Query Frame = 2
Query:  131 RIASVRAAVAGPLNGVRSYASEAKATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            R+A     VAG     R +AS AKA PTEVSSILE+RIRGVSEE+ L ETGRVL+VGDGIARV G+ NVQAEELVEF+SGVKGM +NLE GQVG+VLFGSDRLVKEGE VKRTG+IV+V VGPELLGRVVDALGNPIDGKGP+N   + RAQ+KAPGIL
Sbjct:   25 RVARPALVVAG-----RRFAS-AKAQPTEVSSILEERIRGVSEESNLNETGRVLAVGDGIARVFGLNNVQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGEVVKRTGKIVDVGVGPELLGRVVDALGNPIDGKGPINASGRSRAQVKAPGIL 177          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_YEAST (ATP synthase subunit alpha, mitochondrial OS=Saccharomyces cerevisiae GN=ATP1 PE=1 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 2.265e-56
Identity = 117/160 (73.12%), Postives = 132/160 (82.50%), Query Frame = 2
Query:  134 IASVRAA--VAGPLNGVRSYASEAKATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            I S +AA   A  L   R  AS  KA PTEVSSILE+RI+GVS+EA L ETGRVL+VGDGIARV G+ N+QAEELVEF+SGVKGM +NLE GQVG+VLFGSDRLVKEGE VKRTG IV+VPVGP LLGRVVDALGNPIDGKGP++   + RAQ+KAPGIL
Sbjct:   16 INSTKAARPAAAALASTRRLAS-TKAQPTEVSSILEERIKGVSDEANLNETGRVLAVGDGIARVFGLNNIQAEELVEFSSGVKGMALNLEPGQVGIVLFGSDRLVKEGELVKRTGNIVDVPVGPGLLGRVVDALGNPIDGKGPIDAAGRSRAQVKAPGIL 174          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_SCHPO (ATP synthase subunit alpha, mitochondrial OS=Schizosaccharomyces pombe GN=atp1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.286e-51
Identity = 103/143 (72.03%), Postives = 119/143 (83.22%), Query Frame = 2
Query:  179 RSYASEAKATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            R YA   KA PTEV SILE+RIRG   +A + E+GRVLS+GDGIAR+ G++NVQAEELVEF+SG+KGM +NLEA  VG VLFG+DRLV+EGE VKRT  IV+VPVG  LLGRVVDALGNPIDGKGP+ T E+RR QLKAPGIL
Sbjct:   25 RGYAE--KAAPTEVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNLEADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTERRRVQLKAPGIL 165          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_BOVIN (ATP synthase subunit alpha, mitochondrial OS=Bos taurus GN=ATP5A1 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.127e-47
Identity = 94/136 (69.12%), Postives = 111/136 (81.62%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K    EVSSILE+RI G      L ETGRVLS+GDGIARVHG+ NVQAEE+VEF+SG+KGM +NLE   VGVV+FG+D+L+KEG+ VKRTG IV+VPVG ELLGRVVDALGN IDGKGP+ +K +RR  LKAPGI+
Sbjct:   45 KTGTAEVSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGII 180          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_PONAB (ATP synthase subunit alpha, mitochondrial OS=Pongo abelii GN=ATP5A1 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.922e-47
Identity = 93/136 (68.38%), Postives = 112/136 (82.35%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K    E+SSILE+RI G      L ETGRVLS+GDGIARVHG+ NVQAEE+VEF+SG+KGM +NLE   VGVV+FG+D+L+KEG+ VKRTG IV+VPVG ELLGRVVDALGN IDGKGP+++K +RR  LKAPGI+
Sbjct:   45 KTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPISSKTRRRVGLKAPGII 180          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_MOUSE (ATP synthase subunit alpha, mitochondrial OS=Mus musculus GN=Atp5a1 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.922e-47
Identity = 93/136 (68.38%), Postives = 111/136 (81.62%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K    E+SSILE+RI G      L ETGRVLS+GDGIARVHG+ NVQAEE+VEF+SG+KGM +NLE   VGVV+FG+D+L+KEG+ VKRTG IV+VPVG ELLGRVVDALGN IDGKGP+ +K +RR  LKAPGI+
Sbjct:   45 KTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDVVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_PANTR (ATP synthase subunit alpha, mitochondrial OS=Pan troglodytes GN=ATP5A1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.511e-47
Identity = 93/136 (68.38%), Postives = 111/136 (81.62%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K    E+SSILE+RI G      L ETGRVLS+GDGIARVHG+ NVQAEE+VEF+SG+KGM +NLE   VGVV+FG+D+L+KEG+ VKRTG IV+VPVG ELLGRVVDALGN IDGKGP+ +K +RR  LKAPGI+
Sbjct:   45 KTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_HUMAN (ATP synthase subunit alpha, mitochondrial OS=Homo sapiens GN=ATP5A1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.511e-47
Identity = 93/136 (68.38%), Postives = 111/136 (81.62%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K    E+SSILE+RI G      L ETGRVLS+GDGIARVHG+ NVQAEE+VEF+SG+KGM +NLE   VGVV+FG+D+L+KEG+ VKRTG IV+VPVG ELLGRVVDALGN IDGKGP+ +K +RR  LKAPGI+
Sbjct:   45 KTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGII 180          
BLAST of FC930957 vs. ExPASy Swiss-Prot
Match: ATPA_RAT (ATP synthase subunit alpha, mitochondrial OS=Rattus norvegicus GN=Atp5a1 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 5.593e-47
Identity = 93/136 (68.38%), Postives = 111/136 (81.62%), Query Frame = 2
Query:  200 KATPTEVSSILEQRIRGVSEEAGLAETGRVLSVGDGIARVHGMTNVQAEELVEFASGVKGMCMNLEAGQVGVVLFGSDRLVKEGETVKRTGEIVEVPVGPELLGRVVDALGNPIDGKGPLNTKEKRRAQLKAPGIL 607
            K    E+SSILE+RI G      L ETGRVLS+GDGIARVHG+ NVQAEE+VEF+SG+KGM +NLE   VGVV+FG+D+L+KEG+ VKRTG IV+VPVG ELLGRVVDALGN IDGKGP+ +K +RR  LKAPGI+
Sbjct:   45 KTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGDELLGRVVDALGNAIDGKGPVGSKIRRRVGLKAPGII 180          
The following BLAST results are available for this feature:
BLAST of FC930957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_NEUCR4.702e-7085.71ATP synthase subunit alpha, mitochondrial OS=Neuro... [more]
ATPA_KLULA4.129e-5875.47ATP synthase subunit alpha, mitochondrial OS=Kluyv... [more]
ATPA_YEAST2.265e-5673.13ATP synthase subunit alpha, mitochondrial OS=Sacch... [more]
ATPA_SCHPO1.286e-5172.03ATP synthase subunit alpha, mitochondrial OS=Schiz... [more]
ATPA_BOVIN1.127e-4769.12ATP synthase subunit alpha, mitochondrial OS=Bos t... [more]
ATPA_PONAB1.922e-4768.38ATP synthase subunit alpha, mitochondrial OS=Pongo... [more]
ATPA_MOUSE1.922e-4768.38ATP synthase subunit alpha, mitochondrial OS=Mus m... [more]
ATPA_PANTR2.511e-4768.38ATP synthase subunit alpha, mitochondrial OS=Pan t... [more]
ATPA_HUMAN2.511e-4768.38ATP synthase subunit alpha, mitochondrial OS=Homo ... [more]
ATPA_RAT5.593e-4768.38ATP synthase subunit alpha, mitochondrial OS=Rattu... [more]

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Properties
Property NameValue
Genbank descriptionC34110H02EF PostHarvP1 Citrus clementina cDNA clone C34110H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930957 ID=FC930957; Name=FC930957; organism=Citrus clementina; type=EST; length=609bp
GGTTCTCTCTCCCCAATTACATCTCTTCCTCAGAGAATTCATCCTCCCAT
CCTCTGAACTCCCTTTCACAATGTTCAGAAACGCTCTGCGGTCGTCCAGC
CGCTCCATCGCGGCTGTTTCGGCCACTGGCCGCATCGCCTCGGTCCGCGC
GGCTGTTGCCGGTCCTCTCAACGGCGTTCGCTCGTACGCTTCCGAGGCCA
AGGCTACCCCTACCGAGGTCTCCTCCATCCTTGAGCAGCGCATCCGTGGT
GTCTCTGAGGAGGCTGGTCTTGCTGAGACCGGTCGTGTTCTGTCGGTCGG
TGATGGTATCGCCCGTGTCCACGGCATGACCAACGTCCAGGCTGAGGAGC
TGGTCGAGTTCGCCTCCGGCGTTAAGGGTATGTGCATGAACCTCGAGGCC
GGCCAGGTCGGTGTTGTGCTTTTCGGTTCCGACCGTCTCGTCAAGGAGGG
TGAGACCGTCAAGCGTACCGGCGAGATTGTCGAGGTCCCCGTCGGCCCTG
AGCTGCTCGGCCGTGTCGTCGATGCTCTTGGTAACCCCATTGATGGCAAG
GGTCCTCTTAACACCAAGGAGAAGCGCCGTGCCCAGCTCAAGGCCCCCGG
CATTCTGCC
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