FC930960

Overview
NameFC930960
Unique NameFC930960
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 1.002e-67
Identity = 120/145 (82.76%), Postives = 133/145 (91.72%), Query Frame = 2
Query:   32 MRGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            +RGP KH KR++AP HWLL K+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL+KVDGKVRTD+T+P GFMDVIS+EKTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG  G+PFLVTHD RT
Sbjct:    2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.232e-67
Identity = 119/145 (82.07%), Postives = 133/145 (91.72%), Query Frame = 2
Query:   32 MRGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            +RGP KH KR++AP HWLL K+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL+KVDGKVRTD+T+P GFMDVIS++KTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG  G+PFLVTHD RT
Sbjct:    2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.915e-67
Identity = 119/145 (82.07%), Postives = 133/145 (91.72%), Query Frame = 2
Query:   32 MRGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            +RGP KH KR++AP HWLL K+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL++VDGKVRTD+T+P GFMDVIS+EKTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG  G+PFLVTHD RT
Sbjct:    2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRT 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.431e-63
Identity = 114/144 (79.17%), Postives = 129/144 (89.58%), Query Frame = 2
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KRL+APSHW+L K+SGTYAP++S GPHKLR+ LPL++F+RNRLKYALNGREV AI+MQRLVKVDGKVRTD+T+PAGFMDVI LEKTGE+FRLVYD KGRF VHRI  EEA YKL KVKRVQ+GK GIP+LVTHD RT
Sbjct:    3 RGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRT 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 6.955e-61
Identity = 107/144 (74.31%), Postives = 125/144 (86.81%), Query Frame = 2
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV+++ +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDART 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 1.186e-60
Identity = 107/144 (74.31%), Postives = 124/144 (86.11%), Query Frame = 2
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV++  +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDART 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 1.186e-60
Identity = 106/144 (73.61%), Postives = 124/144 (86.11%), Query Frame = 2
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV+++ +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDART 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.549e-60
Identity = 112/144 (77.78%), Postives = 125/144 (86.81%), Query Frame = 2
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KRL+AP HWLL K+SG YAP+ S GPHKLR+ LPLIVF+RNRLKYALNGREVKAI+MQR VKVDGKVRTDTTYPAGFMDVI+L+ T E+FRLVYD KGRF VHRI  EEA YKL KVK+VQLGK G+P++VTHD RT
Sbjct:    3 RGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRT 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4)

HSP 1 Score: 231.876 bits (590), Expect = 2.643e-60
Identity = 106/144 (73.61%), Postives = 124/144 (86.11%), Query Frame = 2
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI +EEA+YKLCKV++  +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITSEEAKYKLCKVRKTWVGTKGIPHLVTHDART 146          
BLAST of FC930960 vs. ExPASy Swiss-Prot
Match: RS4Y2_PANTR (40S ribosomal protein S4, Y isoform 2 OS=Pan troglodytes GN=RPS4Y2 PE=2 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.452e-60
Identity = 106/144 (73.61%), Postives = 123/144 (85.42%), Query Frame = 2
Query:   35 RGPGKHQKRLSAPSHWLLGKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDART 466
            RGP KH KR++AP HW+L K++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +K+DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI  EEA+YKLCKV+++ +G  GIP LVTHDART
Sbjct:    3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDART 146          
The following BLAST results are available for this feature:
BLAST of FC930960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4A_SCHPO1.002e-6782.7640S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4C_SCHPO2.232e-6782.0740S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4B_SCHPO2.915e-6782.0740S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4_YARLI7.431e-6379.1740S ribosomal protein S4 OS=Yarrowia lipolytica GN... [more]
RS4_CHICK6.955e-6174.3140S ribosomal protein S4 OS=Gallus gallus GN=RPS4 ... [more]
RS4_XENTR1.186e-6074.3140S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4Y1_MACFU1.186e-6073.6140S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4_YEAST1.549e-6077.7840S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4_XENLA2.643e-6073.6140S ribosomal protein S4 OS=Xenopus laevis GN=rps4... [more]
RS4Y2_PANTR3.452e-6073.6140S ribosomal protein S4, Y isoform 2 OS=Pan trogl... [more]

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Properties
Property NameValue
Genbank descriptionC34110H05EF PostHarvP1 Citrus clementina cDNA clone C34110H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930960 ID=FC930960; Name=FC930960; organism=Citrus clementina; type=EST; length=712bp
GACCTAACCTTCAGTTGACAAATCAGTCAAAATGCGCGGCCCCGGAAAGC
ACCAGAAGCGCCTCAGCGCGCCCTCGCACTGGCTCTTGGGCAAAATGTCC
GGAACCTACGCGCCCAAGGCCTCCCCCGGTCCCCACAAGCTCCGGGACTG
CCTTCCCCTGATTGTCTTCATCCGTAACCGTCTCAAGTACGCCCTGAACG
GTCGCGAGGTCAAGGCCATCATGATGCAGCGTCTGGTCAAGGTTGACGGC
AAGGTCCGCACCGACACCACCTACCCCGCTGGATTCATGGACGTCATCTC
CCTCGAGAAGACCGGCGAGCACTTCCGTCTCGTTTACGACACCAAGGGTC
GCTTCACCGTCCACCGTATTCAGGCTGAGGAGGCTGAGTACAAGCTCTGC
AAGGTCAAGCGTGTTCAGCTCGGCAAGGGCGGGATCCCATTCTTGGTTAC
GCACGATGCGCGAACGTGAGTTCCACACTTCACAAGTTCCGTGTCATTCA
GTCGTTGGACCAAGCTTTGGTTGATCGGCGGAGGACAATGGAAACAGTAA
GATCCCAATACATCAGAACATGGTTTTGCTAACTTGCGTTCGTCCTCTAC
AGCATCCGCTACCCCGACCCTGCCATCAAGGTCAACGACACCGTCAAGGT
TGACATTGCCACTGGCAAGATCCTCGACTTCGTCAAGTTCGACTCCGGTG
TTGTCATCATGG
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