FC930961
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_YARLI (40S ribosomal protein S4 OS=Yarrowia lipolytica GN=RPS4 PE=2 SV=1) HSP 1 Score: 361.688 bits (927), Expect = 2.212e-99 Identity = 169/214 (78.97%), Postives = 194/214 (90.65%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDN 680 RGP KH KRL+APSHW+LDK+SGTYAP++S GPHKLR+ LPL++F+RNRLKYALNGREV AI+MQRLVKVDGKVRTD+T+PAGFMDVI LEKTGE+FRLVYD KGRF VHRI EEA YKL KVKRVQ+GK GIP+LVTHD RTIRYPDP IKVNDTVK+D+ATGKI FVKF++G ++M TGGRNMGRVG ITHRERH+GGF+IVH++DALDN Sbjct: 3 RGPKKHLKRLAAPSHWMLDKLSGTYAPRSSAGPHKLRESLPLVIFLRNRLKYALNGREVNAILMQRLVKVDGKVRTDSTFPAGFMDVIQLEKTGENFRLVYDVKGRFAVHRITDEEAAYKLGKVKRVQVGKKGIPYLVTHDGRTIRYPDPLIKVNDTVKIDLATGKITSFVKFENGNIVMTTGGRNMGRVGTITHRERHEGGFDIVHIKDALDN 216
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2) HSP 1 Score: 356.681 bits (914), Expect = 7.115e-98 Identity = 166/214 (77.57%), Postives = 188/214 (87.85%), Query Frame = 3 Query: 36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALD 677 +RGP KH KR++AP HWLLDK+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL+KVDGKVRTD+T+P GFMDVIS+EKTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG G+PFLVTHD RTIRYPDP IKVNDT+K+++ T KI F+KFD+ +M TGGRNMGRVG I HRE H G F I+HV+DALD Sbjct: 2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALD 215
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1) HSP 1 Score: 355.525 bits (911), Expect = 1.585e-97 Identity = 165/214 (77.10%), Postives = 188/214 (87.85%), Query Frame = 3 Query: 36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALD 677 +RGP KH KR++AP HWLLDK+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL+KVDGKVRTD+T+P GFMDVIS++KTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG G+PFLVTHD RTIRYPDP IKVNDT+K+++ T KI F+KFD+ +M TGGRNMGRVG I HRE H G F I+HV+DALD Sbjct: 2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALD 215
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1) HSP 1 Score: 355.14 bits (910), Expect = 2.070e-97 Identity = 165/214 (77.10%), Postives = 188/214 (87.85%), Query Frame = 3 Query: 36 MRGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALD 677 +RGP KH KR++AP HWLLDK+SGTYAPK SPGPHK R+CLPLIVF+RNRLKYALNGREVKAI+MQRL++VDGKVRTD+T+P GFMDVIS+EKTGEHFRLVYD KGRFTVHRI AEEA+YKLCKVKRVQLG G+PFLVTHD RTIRYPDP IKVNDT+K+++ T KI F+KFD+ +M TGGRNMGRVG I HRE H G F I+HV+DALD Sbjct: 2 VRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALD 215
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3) HSP 1 Score: 348.206 bits (892), Expect = 2.530e-95 Identity = 161/215 (74.88%), Postives = 190/215 (88.37%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683 RGP KH KRL+AP HWLLDK+SG YAP+ S GPHKLR+ LPLIVF+RNRLKYALNGREVKAI+MQR VKVDGKVRTDTTYPAGFMDVI+L+ T E+FRLVYD KGRF VHRI EEA YKL KVK+VQLGK G+P++VTHD RTIRYPDP IKVNDTVK+D+A+GKI DF+KFD+G ++ TGGRN+GR+G I H+ERHDGGF++VH++D+LDN+ Sbjct: 3 RGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNT 217
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_CHICK (40S ribosomal protein S4 OS=Gallus gallus GN=RPS4 PE=2 SV=2) HSP 1 Score: 340.117 bits (871), Expect = 6.891e-93 Identity = 155/215 (72.09%), Postives = 186/215 (86.51%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683 RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV+++ +G GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G F++VHV+DA NS Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNS 217
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3) HSP 1 Score: 339.347 bits (869), Expect = 1.175e-92 Identity = 155/215 (72.09%), Postives = 185/215 (86.05%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683 RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV++ +G GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G F++VHV+DA NS Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNS 217
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4_XENLA (40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4) HSP 1 Score: 337.035 bits (863), Expect = 5.834e-92 Identity = 153/215 (71.16%), Postives = 185/215 (86.05%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683 RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVRTD TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI +EEA+YKLCKV++ +G GIP LVTHDARTIRYPDP IKVNDT+++D+ TGKI DF+KFD+G + M TGG N+GR+GVIT+RERH G F++VHV+DA N+ Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITSEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNN 217
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3) HSP 1 Score: 336.65 bits (862), Expect = 7.619e-92 Identity = 154/215 (71.63%), Postives = 183/215 (85.12%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683 RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLI+F+RNRLKYAL G EVK I MQR +K+DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI AEEA+YKLCKV+++ +G GIP LVTHDARTIRYPDP IKVNDTV++D+ +GKI F+KFD+G V M GG N+GRVGVIT+RERH G F++VHV+DA NS Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNS 217
BLAST of FC930961 vs. ExPASy Swiss-Prot
Match: RS4Y1_PANTR (40S ribosomal protein S4, Y isoform 1 OS=Pan troglodytes GN=RPS4Y1 PE=2 SV=2) HSP 1 Score: 336.265 bits (861), Expect = 9.951e-92 Identity = 154/215 (71.63%), Postives = 184/215 (85.58%), Query Frame = 3 Query: 39 RGPGKHQKRLSAPSHWLLDKMSGTYAPKASPGPHKLRDCLPLIVFIRNRLKYALNGREVKAIMMQRLVKVDGKVRTDTTYPAGFMDVISLEKTGEHFRLVYDTKGRFTVHRIQAEEAEYKLCKVKRVQLGKGGIPFLVTHDARTIRYPDPAIKVNDTVKVDIATGKILDFVKFDSGVVIMATGGRNMGRVGVITHRERHDGGFNIVHVRDALDNS 683 RGP KH KR++AP HW+LDK++G +AP+ S GPHKLR+CLPLIVF+RNRLKYAL G EVK I MQR +K+DGKVR D TYPAGFMDVIS+EKTGEHFRLVYDTKGRF VHRI EEA+YKLCKV+++ +G GIP LVTHDARTIRYPDP IKVNDTV++D+ TGKI++F+KFD+G + M GG N+GRVGVIT+RERH G F++VHV+DA NS Sbjct: 3 RGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGVKGIPHLVTHDARTIRYPDPVIKVNDTVQIDLGTGKIINFIKFDTGNLCMVIGGANLGRVGVITNRERHPGSFDVVHVKDANGNS 217 The following BLAST results are available for this feature:
BLAST of FC930961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930961 ID=FC930961; Name=FC930961; organism=Citrus clementina; type=EST; length=713bpback to top |