FC930969

Overview
NameFC930969
Unique NameFC930969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15243 contig Ccv1_Contig15243:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930969 vs. ExPASy Swiss-Prot
Match: OSB2_ARATH (Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.031e-27
Identity = 62/109 (56.88%), Postives = 79/109 (72.48%), Query Frame = 1
Query:  400 PKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP---AIEGQANVQVMVHSLNLI 711
            P+P+EI ++ +VAN VNLIG VD PVQF+ SSDGK WAGTVI Q +AS S   WIPI+FEGDLA  A+ ++ KDD +H++G+L  D P       QANVQV+V +LN I
Sbjct:   86 PRPNEIAYESEVANWVNLIGFVDQPVQFEASSDGKFWAGTVISQRSASDSSGFWIPIIFEGDLAKTAARYVSKDDQIHVSGKLFIDSPPPNMTYAQANVQVLVQNLNFI 194          
BLAST of FC930969 vs. ExPASy Swiss-Prot
Match: OSB4_ARATH (Protein OSB4, chloroplastic OS=Arabidopsis thaliana GN=OSB4 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 1
Query:  397 WPKPSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS---------LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTAD---PPAIEGQANVQV 687
            WP+P E+P+Q K+ANS++LIG+V  PVQF ++ DGK WAGTVI    +S S          WIP+LFEGDLAH A+S+LKK+D VHI GQ+  D     A   QA+VQ+
Sbjct:   59 WPRPMEVPYQPKIANSIDLIGYVHQPVQFDSTLDGKFWAGTVISHEPSSDSKSESDSSSNFWIPVLFEGDLAHTANSYLKKNDRVHITGQILGDVIQSGANSDQAHVQL 167          
BLAST of FC930969 vs. ExPASy Swiss-Prot
Match: OSB3_ARATH (Protein OSB3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=OSB3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  406 PSEIPFQVKVANSVNLIGHVDAPVQFQTSSDGKHWAGTVIVQHAASHS--LWIPILFEGDLAHIASSHLKKDDHVHIAGQLTADPP---AIEGQANVQVMVHSLNLI 711
            P +I ++ +++N +NLIG V+ PVQF   SDGK WAGTVI Q + S S   WIPI+FEGDLA IA  H+KK+D +H++G+L  D P       Q+NVQVMV +LN +
Sbjct:   71 PKKIEYKPEISNWINLIGFVEQPVQFGPCSDGKFWAGTVISQRSGSKSSNFWIPIIFEGDLAKIAVQHVKKEDRIHVSGKLFIDSPPPNVTYSQSNVQVMVQNLNFV 177          
The following BLAST results are available for this feature:
BLAST of FC930969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
OSB2_ARATH5.031e-2756.88Protein OSB2, chloroplastic OS=Arabidopsis thalian... [more]
OSB4_ARATH8.032e-2552.29Protein OSB4, chloroplastic OS=Arabidopsis thalian... [more]
OSB3_ARATH8.880e-2451.40Protein OSB3, chloroplastic/mitochondrial OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionC34100A03EF PostHarvP1 Citrus clementina cDNA clone C34100A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930969 ID=FC930969; Name=FC930969; organism=Citrus clementina; type=EST; length=711bp
GGAGGTTGGGAATTGGGAATTGCCAGTATTGCTATTTTAAATTTTTTAGT
ACGTCCTAGATTAGTTGAATGACCGCTCATTTCATTTTTCCTAACACTTA
AAACCCTAAAAATCAAACAAAACCCCACCGCCAATCTCCGCACCCTCTTT
TCAGAAAGTGCTTTCTGTTTCCTTTTAATTGGTTCTCTTTAATTTCACTC
TTCTTGCCAATAATTTAACGAAGAAAGAAATATGATGTATTCGCTTCATC
GAGTAATGGCACAAATCGGGCGATCGCAGACCACAGTGAAACGCATCATT
TTGTATTCGCCCGCTCGTTTTACTCGGCCTTTCTCCAGTAGAGCTCATCA
GTTCACTAAAGCCACGACGAAAACGACGACGTCGAAGGATGTGGTTTGGC
CGAAGCCGAGCGAAATTCCATTTCAGGTGAAAGTCGCCAACTCGGTGAAT
TTGATTGGACATGTGGATGCACCGGTTCAGTTCCAGACTTCTTCTGACGG
CAAACACTGGGCTGGCACTGTCATCGTTCAGCACGCCGCTTCGCATTCAC
TCTGGATTCCTATATTGTTCGAAGGTGATTTGGCTCACATCGCTTCTAGC
CATTTGAAAAAAGATGATCATGTACATATAGCGGGACAACTGACTGCTGA
TCCACCTGCCATCGAAGGCCAAGCCAATGTTCAGGTTATGGTCCATAGTC
TCAACTTGATC
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