FC930973

Overview
NameFC930973
Unique NameFC930973
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length735
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15244 contig Ccv1_Contig15244:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC930973 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.849e-17
Identity = 45/119 (37.82%), Postives = 73/119 (61.34%), Query Frame = 1 
Query:  253 LKGRVWKESKKLWRVAFPAMLARVSQYGMFVITQGFIGHLGEVELAAYALIQIIAVRFSNGILIGMSSATETLCGQAFGAKQYHMMGIYLQRSWIINLATGTILLPAFIFAADIFKLLG 609
            LK  VW ESK LW ++  +++  V  Y +  +T  F GHLG ++LA  ++  +     + GI++GM+SA +T+CGQA+GA+QY  MGI  QR+ +++LA    L   + ++  I K +G
Sbjct:   45 LKLAVW-ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMG 162
The following BLAST results are available for this feature:
BLAST of FC930973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH3.849e-1737.82Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC34100A07EF PostHarvP1 Citrus clementina cDNA clone C34100A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930973 ID=FC930973; Name=FC930973; organism=Citrus clementina; type=EST; length=735bp
GATTTTCACTGTTTTTTCATTCCACTCTGTCAGCTTACTAAATTAACATC
ATCCCATTCCCCAGGTGTCTTCTTTGCTTGCCTCTACTTTCATATCTCCT
CTGCCTATGCATTCTTGAAGTGAGAAATTAATCTCTTGGGCTGAAACTCT
AGCTAGAAGCTATCCTCCTTGTTCAACTAATCAAGCAAGAACTTCTCTCA
AGGCCAAATGGAGGAGAGACTACTCGGTTCAGAAGCAAAAGATATTGATG
ATTTAAAAGGGAGGGTTTGGAAAGAATCGAAAAAGCTATGGAGGGTTGCA
TTTCCTGCAATGTTAGCTAGGGTTTCTCAGTATGGTATGTTCGTTATCAC
ACAGGGATTTATTGGTCATCTTGGTGAGGTTGAGCTTGCAGCTTACGCGC
TCATTCAAATCATAGCCGTCCGATTTTCAAATGGGATTTTGATCGGCATG
TCAAGCGCAACTGAAACTCTGTGCGGGCAAGCATTTGGAGCAAAGCAATA
CCACATGATGGGTATCTACTTGCAAAGATCATGGATCATAAATCTTGCTA
CTGGAACAATATTGCTTCCTGCGTTTATCTTCGCAGCGGATATTTTCAAA
CTGCTCGGAGAACAACAGACATAGCAAACAGAGCCGGAGACATCTCACTT
TGGTTCATTGGCATTCTCTATTTCTTTGTCTTCAGCTTAACGATCCAAAA
GTACTTGCAAGCACAGCTCAAGAACATGATCGTCG
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