FC930981

Overview
NameFC930981
Unique NameFC930981
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930981 vs. ExPASy Swiss-Prot
Match: S35C2_MOUSE (Solute carrier family 35 member C2 OS=Mus musculus GN=Slc35c2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.176e-11
Identity = 51/192 (26.56%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  140 GQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVM------KVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKL-NPISVMYYVSPCSALCLF 694
            G  F+NKW+  S    F FPL +T+LH+     + FL + + + +      K    ++   Y   V P     A+ + L N ++LYI+V+   M K+   + + I  +   LE +   ++L++ +I+ G+ + +Y     N  G    +G      +R    +IL+++  L L NPI  M+++ P   L LF
Sbjct:   30 GITFYNKWLTKS----FHFPLFMTMLHL----AVIFLFSALSRALVQCSSHKARVVLSWTDYLRRVAPTALATALDVGLSNWSFLYITVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQILLQKADLGLQNPIDTMFHLQPLMFLGLF 213          
BLAST of FC930981 vs. ExPASy Swiss-Prot
Match: S35C2_HUMAN (Solute carrier family 35 member C2 OS=Homo sapiens GN=SLC35C2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.621e-11
Identity = 51/207 (24.64%), Postives = 95/207 (45.89%), Query Frame = 2
Query:   95 VLTXXXXXXXXXXXXGQIFFNKWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTKVFKVM------KVEDGMTLEIYTTSVIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININWIGVVYQMGGVVGEALRLIFMEILVKRKGLKL-NPISVMYYVSPCSALCLF 694
            VLT            G  F+NKW+  S    F FPL +T+LH+     + FL + + + +      +    ++   Y   V P     A+ + L N ++LY++V+   M K+   + + I  +   LE +   ++L++ +I+ G+ + +Y     N  G    +G      +R    ++L+++  L L NPI  M+++ P   L LF
Sbjct:   15 VLTLGLVLLYYCFSIGITFYNKWLTKS----FHFPLFMTMLHL----AVIFLFSALSRALVQCSSHRARVVLSWADYLRRVAPTALATALDVGLSNWSFLYVTVSLYTMTKSSAVLFILIFSLIFKLEELRAALVLVVLLIAGGLFMFTYKSTQFNVEGFALVLGASFIGGIRWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLF 213          
The following BLAST results are available for this feature:
BLAST of FC930981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
S35C2_MOUSE1.176e-1126.56Solute carrier family 35 member C2 OS=Mus musculus... [more]
S35C2_HUMAN7.621e-1124.64Solute carrier family 35 member C2 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionC34100B04EF PostHarvP1 Citrus clementina cDNA clone C34100B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930981 ID=FC930981; Name=FC930981; organism=Citrus clementina; type=EST; length=769bp
CCTGGCCGGGGGAGAGGGATTAGAGTTAAGTCAAGCGGAAGCGGAAGCGG
GAGCGGCAATGGCGGATCGGGAGAGAAGAATGTTTAGAGAACAAGTGTTA
ACTTACGCATACATTCTCCTCTACATCGCTCTCTCTAGTGGTCAGATCTT
CTTCAACAAGTGGGTATTGTCATCAAAGGAAATAAACTTTCCTTTTCCTC
TTGGATTGACGCTGCTTCACATGGTGTTTTCCTCTGTATTATGTTTTTTG
CTCACCAAAGTTTTCAAGGTCATGAAGGTTGAGGACGGAATGACATTGGA
AATATACACGACATCAGTTATCCCTATTGGTGCAATGTTTGCAATGACCC
TATGGCTCGGAAACACTGCCTACCTCTATATTTCAGTTGCATTTGCACAA
ATGTTGAAGGCAATCATGCCAGTAGCTGTTTTCATTCTTGGAGTAGCTGC
TGGACTTGAGGTAATGAGCTGCAGAATGCTATTGATAATGTCAGTGATAA
GTTTTGGAGTTGTAGTGGCTTCTTACGGGGAAATAAATATAAACTGGATT
GGAGTTGTTTACCAAATGGGTGGCGTCGTTGGTGAAGCTTTAAGACTTAT
ATTCATGGAGATTCTGGTTAAAAGGAAGGGTCTCAAATTAAACCCTATTT
CTGTCATGTATTACGTCAGTCCCTGCAGTGCTCTTTGTCTCTTTATACCG
TGGATCTTTCTGGAGAAACCAAGATGGATGCACTGGAAACATGGCACTTT
CCACGCTTATGCTACACTG
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