FC930983

Overview
NameFC930983
Unique NameFC930983
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930983 vs. ExPASy Swiss-Prot
Match: SRAC1_BOVIN (Protein SERAC1 OS=Bos taurus GN=SERAC1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.307e-27
Identity = 40/79 (50.63%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  470 STMLLEKLVAAGIGSRPVVFVTHSMGGLVVKQMLHKA-KTENIDNFVKNTVGLVFYSCPHFGSKLADMPWRMGLVLRPA 703
            S  LL KL AAG+G RPVV+V+HSMGGL+VK+ML +A K   ++  + NT G++FYS PH GS LA+    +  +L P+
Sbjct:  475 SNELLRKLRAAGVGDRPVVWVSHSMGGLLVKKMLLEASKRPEMNTIINNTRGIIFYSVPHHGSHLAEYSVNIRYLLFPS 553          

HSP 2 Score: 65.855 bits (159), Expect = 4.307e-27
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:  193 DIVFIHGLRGGPYKTWRISDDKYSTKSGLVEKIDQEAGKFGTFWPAEWLSADFPQARMFTLKYKSNLTQW 402
            D++FIHGL G  +KTWR  D+       L EK+ ++  K+ T WP  WL+ D P  R+ +++Y ++L+ W
Sbjct:  395 DVLFIHGLMGAAFKTWRQQDNDQD----LTEKVSEDETKYTTCWPKSWLARDCPALRIISVEYDTSLSDW 460          
BLAST of FC930983 vs. ExPASy Swiss-Prot
Match: SRAC1_HUMAN (Protein SERAC1 OS=Homo sapiens GN=SERAC1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.095e-26
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  470 STMLLEKLVAAGIGSRPVVFVTHSMGGLVVKQMLHKAKTE-NIDNFVKNTVGLVFYSCPHFGSKLADMPWRMGLVLRPA 703
            S  LL KL AAG+G RPVV+++HSMGGL+VK+ML +A T+  +   + NT G++FYS PH GS+LA+    +  +L P+
Sbjct:  475 SNELLRKLRAAGVGDRPVVWISHSMGGLLVKKMLLEASTKPEMSTVINNTRGIIFYSVPHHGSRLAEYSVNIRYLLFPS 553          

HSP 2 Score: 62.3882 bits (150), Expect = 2.095e-26
Identity = 25/70 (35.71%), Postives = 44/70 (62.86%), Query Frame = 1
Query:  193 DIVFIHGLRGGPYKTWRISDDKYSTKSGLVEKIDQEAGKFGTFWPAEWLSADFPQARMFTLKYKSNLTQW 402
            D++FIHGL G  +KTWR  D    ++  ++EK  ++  ++ T WP  WL+ D P  R+ +++Y ++L+ W
Sbjct:  395 DVLFIHGLMGAAFKTWRQQD----SEQAVIEKPMEDEDRYTTCWPKTWLAKDCPALRIISVEYDTSLSDW 460          
BLAST of FC930983 vs. ExPASy Swiss-Prot
Match: SRAC1_MOUSE (Protein SERAC1 OS=Mus musculus GN=Serac1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.441e-25
Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  470 STMLLEKLVAAGIGSRPVVFVTHSMGGLVVKQMLHKA-KTENIDNFVKNTVGLVFYSCPHFGSKLADMPWRMGLVLRPA 703
            S  LL KL AAG+G RP+++++HSMGGL+VK+ML +A K   ++  + NT G++FYS PH GS+LA+    +  +L P+
Sbjct:  475 SNELLSKLRAAGVGDRPMIWISHSMGGLLVKKMLLEASKKPELNALINNTRGIIFYSVPHHGSRLAEYSVNIRYLLFPS 553          

HSP 2 Score: 59.6918 bits (143), Expect = 6.441e-25
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = 1
Query:  193 DIVFIHGLRGGPYKTWRISDDKYSTKSGLVEKIDQEAGKFGTFWPAEWLSADFPQARMFTLKYKSNLTQW 402
            D++FIHGL G  +KTWR    ++ ++  L E    +  ++ T WP  WL+ D P  R+ +++Y ++L+ W
Sbjct:  395 DVLFIHGLMGAAFKTWR----QHDSQRALTESAVVDEDRYTTCWPKTWLAKDCPSLRIISVEYDTSLSDW 460          
BLAST of FC930983 vs. ExPASy Swiss-Prot
Match: SRAC1_DANRE (Protein SERAC1 OS=Danio rerio GN=serac1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.976e-23
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  446 KLLAYNEVSTMLLEKLVAAGIGSRPVVFVTHSMGGLVVKQM-LHKAKTENIDNFVKNTVGLVFYSCPHFGSKLADMPWRMGLVLRPA 703
            K LA+   S  LL KL  AG+G RPV++V HSMGGL+VK+M L  AK  ++ + +KNT G++FYS PH G+ +A+    +  +L P+
Sbjct:  473 KSLAFR--SQELLRKLKDAGVGERPVIWVAHSMGGLLVKKMLLDAAKDPDLSSLIKNTKGILFYSVPHHGTFMAEYSVSVRYLLFPS 557          

HSP 2 Score: 56.9954 bits (136), Expect = 1.976e-23
Identity = 24/71 (33.80%), Postives = 41/71 (57.75%), Query Frame = 1
Query:  193 DIVFIHGLRGGPYKTWRISDDKYSTKSGLVEKIDQEAGKFGTFWPAEWLSADFPQARMFTLKYKSNLTQWS 405
            D++F+HGL G  +KTWR  D   +      EK++     +   WP  WL+AD P  R+ +++Y ++L+ W+
Sbjct:  397 DVLFVHGLLGAAFKTWRQKDCDVTDD----EKLEGVREDYTECWPKSWLAADCPNLRILSVEYDTHLSDWN 463          
The following BLAST results are available for this feature:
BLAST of FC930983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SRAC1_BOVIN4.307e-2750.63Protein SERAC1 OS=Bos taurus GN=SERAC1 PE=2 SV=1[more]
SRAC1_HUMAN2.095e-2649.37Protein SERAC1 OS=Homo sapiens GN=SERAC1 PE=2 SV=1[more]
SRAC1_MOUSE6.441e-2546.84Protein SERAC1 OS=Mus musculus GN=Serac1 PE=2 SV=1[more]
SRAC1_DANRE1.976e-2345.98Protein SERAC1 OS=Danio rerio GN=serac1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC34100B06EF PostHarvP1 Citrus clementina cDNA clone C34100B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930983 ID=FC930983; Name=FC930983; organism=Citrus clementina; type=EST; length=714bp
AATCCTGAACTGCCCCACTGGAAGTGTCCTGATGATAAACATCGAGACAA
TGTTCAGAGGAGTAAGTCTTCTGTTGGTAAGACTGATTTTAATAGTCCAT
CTACACCTGAAACTGAAGCTTCAAATGTTGGTGACTCATGTAGCTCCATT
GATGAATCACAGAACAGCTCACAGTCTGTGGTTCCCCTGGTAGACATTGT
CTTTATTCATGGCCTGCGTGGTGGGCCCTATAAGACTTGGCGCATTTCTG
ATGACAAATACTCAACTAAGTCAGGTTTGGTTGAGAAGATTGATCAGGAA
GCTGGGAAGTTTGGAACATTTTGGCCAGCTGAATGGCTTTCAGCTGACTT
CCCTCAAGCTCGCATGTTTACTCTTAAATACAAGTCAAATCTTACACAAT
GGTCTGGTGCTAGCCTGCCTCTTCAGGTTTGGATTGATGAATTAAAAGCT
ACTGGCTTATAATGAAGTCAGCACCATGCTACTGGAGAAGCTTGTTGCTG
CAGGCATTGGAAGTCGTCCTGTTGTTTTTGTGACACACAGCATGGGAGGC
CTGGTTGTCAAGCAGATGTTACATAAAGCGAAGACTGAAAATATTGATAA
TTTTGTAAAGAACACTGTTGGCCTTGTGTTTTATAGCTGCCCACATTTTG
GAAGCAAACTTGCAGACATGCCTTGGCGAATGGGCCTTGTCCTTCGTCCA
GCACCAACTATAGG
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