FC930984

Overview
NameFC930984
Unique NameFC930984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15445 contig Ccv1_Contig15445:790..1517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 377.096 bits (967), Expect = 5.294e-104
Identity = 182/237 (76.79%), Postives = 215/237 (90.72%), Query Frame = 1
Query:   16 QLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            +LAV+AV+RLKGS NLE+I IIKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+RVRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+M
Sbjct:  181 KLAVEAVLRLKGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLM 417          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 377.096 bits (967), Expect = 5.294e-104
Identity = 182/237 (76.79%), Postives = 215/237 (90.72%), Query Frame = 1
Query:   16 QLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            +LAV+AV+RLKGS NLE+I IIKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+RVRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+M
Sbjct:  181 KLAVEAVLRLKGSGNLEAIHIIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLM 417          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 376.326 bits (965), Expect = 9.030e-104
Identity = 181/237 (76.37%), Postives = 215/237 (90.72%), Query Frame = 1
Query:   16 QLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            +LAV+AV+RLKGS NLE+I +IKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+RVRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDEAERSLHDALCVL+QTV DSR ++GGG  EM+M
Sbjct:  181 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGGGCSEMLM 417          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 374.785 bits (961), Expect = 2.627e-103
Identity = 180/237 (75.95%), Postives = 214/237 (90.30%), Query Frame = 1
Query:   16 QLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            +LAV+AV+RLKGS NLE+I +IKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+RVRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDEAERSLHDALCVL+QTV D R ++GGG  EM+M
Sbjct:  181 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLM 417          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 374.785 bits (961), Expect = 2.627e-103
Identity = 180/237 (75.95%), Postives = 214/237 (90.30%), Query Frame = 1
Query:   16 QLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            +LAV+AV+RLKGS NLE+I +IKK GGSL DS+LDEGF+LDKKIG+ QPKRIENAKIL+ANT MDTDK+KI+G+RVRVDS +K AEIE AEK+KM+EKV++I+ HGINCF+NRQLIYN+PE+LF  AG++AIEHADF G+ERLALVTGGEIASTFD+PE VKLG CKLIEE+MIGEDKLIHFSGV +G+ACTIVLRGA+  +LDEAERSLHDALCVL+QTV D R ++GGG  EM+M
Sbjct:  181 KLAVEAVLRLKGSGNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGGGCSEMLM 417          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.545e-98
Identity = 177/237 (74.68%), Postives = 210/237 (88.61%), Query Frame = 1
Query:   16 QLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            QLAVDAV+RLKGSTNL++IQIIK  GG L DSFLDEGFIL+K IG+  PK +ENA IL+ANTAMDTDKVK++GARVRVD+  K AE+E AE++KM+ KV+KI +H INCF+NRQLIYN+PE+LFADAGI++IEHADFDGIERL+LVTGGEIASTFD+PE VKLGHCK IEEI+IGEDK+I FSGVE G+ACTIVLRGA+H +LDE+ER++HDAL VLSQTV +SRV  GGG  EM+M
Sbjct:  177 QLAVDAVLRLKGSTNLDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVMENANILIANTAMDTDKVKVFGARVRVDTTGKLAELERAEREKMKAKVEKIKSHNINCFINRQLIYNWPEQLFADAGIMSIEHADFDGIERLSLVTGGEIASTFDHPELVKLGHCKKIEEIIIGEDKMIKFSGVEAGEACTIVLRGATHQLLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLM 413          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.465e-93
Identity = 161/236 (68.22%), Postives = 204/236 (86.44%), Query Frame = 1
Query:   19 LAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            + VDAV+RL G+TNL++I IIKK GGSL++S+LDEGFIL+KKIG+G PKR+EN KIL+ANTAMDTDK+KI+G +V VDSM++ A++E AEK+KM  K +KI+ HGINCFVNRQL+YN PE+ FA+ G+++IEHADFDGIERLALVTG EI STFD+PE VK+G CKLIEE+MIGEDK+I FSG+  G+ACTIVLRGA+ H+L+EAERS+HDALCVL+ TV ++R + G G  EM+M
Sbjct:  181 MVVDAVLRLNGNTNLDNIHIIKKSGGSLRESYLDEGFILEKKIGVGCPKRLENPKILIANTAMDTDKIKIFGGKVVVDSMTELAKMEDAEKEKMLNKCKKIVDHGINCFVNRQLVYNLPEQYFAEHGVMSIEHADFDGIERLALVTGAEIVSTFDHPELVKIGTCKLIEEVMIGEDKVIRFSGIPSGEACTIVLRGATSHILEEAERSIHDALCVLAVTVAETRTVLGAGCSEMIM 416          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 2.159e-89
Identity = 157/237 (66.24%), Postives = 202/237 (85.23%), Query Frame = 1
Query:   16 QLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            QLAVDAV+RLKGS NL++IQIIKK GGS+ +S+LDEGF+L+K  G+ QP+R+E AKIL+ANT MDTDKVK++G+RVRVD ++K AE+E AEK KM+EKV KI+AH  N F+NRQLIYN+PE+LFADA ++AIEHADF+GIERLALV GGEI STFD+P++ + G C LIEEIMIGED+L+ FSGV++G+AC++VLRGA+  +LDE+ERSLHDALCVL   V +S+ + G G  E++M
Sbjct:  175 QLAVDAVLRLKGSGNLDAIQIIKKLGGSMNESYLDEGFLLEKLPGMFQPRRVEKAKILIANTPMDTDKVKVFGSRVRVDGVAKVAELEAAEKLKMKEKVDKILAHNCNVFINRQLIYNYPEQLFADAKVMAIEHADFEGIERLALVLGGEIVSTFDSPQTAQFGSCDLIEEIMIGEDRLLRFSGVKLGEACSVVLRGATQQILDESERSLHDALCVLVTHVKESKTVAGAGASEILM 411          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.811e-86
Identity = 156/237 (65.82%), Postives = 189/237 (79.75%), Query Frame = 1
Query:   16 QLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            +LA +A++RLKGSTNLE IQIIK  GG L DSFLDEGFIL KK G  QPKRIENAKIL+ANT +DTDKVKI+G + +VDS +K A++E AE++KM+ K+ KI   GIN F+NRQLIY++PE+LF D GI +IEHADF+G+ERLALVTGGE+ STFD P   KLG C +IEEIM+GE   + FSG + G+ACTIVLRGA+   LDEAERSLHDAL VLSQT  ++R + GGG  EMVM
Sbjct:  175 ELATNAILRLKGSTNLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGVERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKETRTVLGGGCAEMVM 411          
BLAST of FC930984 vs. ExPASy Swiss-Prot
Match: TCPB_ENCCU (T-complex protein 1 subunit beta OS=Encephalitozoon cuniculi GN=CCT2 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.127e-60
Identity = 120/237 (50.63%), Postives = 170/237 (71.73%), Query Frame = 1
Query:   16 QLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSKAAEIEGAEKQKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLFGGGWPEMVM 726
            ++ V+AV +L+G  +L  IQIIK   G L+DS+LD+GF+L K I I     + N ++L+ANT+MD DK+K++GA++ V+S+ +  E+E AEK K++ KV++I  +G+N FVNRQL+Y++P +L    GI AIEHADFDG+ERL  V GG+I STFDN +    G C+ I  + +G +++I FSGV  G A TIVL G+S  +LDEAERS+HDALCVL++   D RV++GGG  EM M
Sbjct:  163 EICVNAVEKLEGRNDLNLIQIIKC-SGKLEDSYLDDGFLLKKDIRIDD---VVNPRVLIANTSMDQDKIKVFGAKINVNSVGELEEMEKAEKIKIKGKVERISQNGVNVFVNRQLVYDYPLQLLRMKGIQAIEHADFDGVERLNNVLGGKILSTFDNMDESCYGTCESIRNVHVGNERMIKFSGVRSG-ASTIVLCGSSKEMLDEAERSVHDALCVLAKIKEDPRVIYGGGSSEMAM 394          
The following BLAST results are available for this feature:
BLAST of FC930984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
TCPB_MACFA5.294e-10476.79T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN5.294e-10476.79T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_BOVIN9.030e-10476.37T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPB_RAT2.627e-10375.95T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_MOUSE2.627e-10375.95T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_SCHPO2.545e-9874.68Probable T-complex protein 1 subunit beta OS=Schiz... [more]
TCPB_DICDI2.465e-9368.22T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPB_CAEEL2.159e-8966.24T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPB_YEAST3.811e-8665.82T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPB_ENCCU6.127e-6050.63T-complex protein 1 subunit beta OS=Encephalitozoo... [more]

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Properties
Property NameValue
Genbank descriptionC34100B07EF PostHarvP1 Citrus clementina cDNA clone C34100B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930984 ID=FC930984; Name=FC930984; organism=Citrus clementina; type=EST; length=727bp
TCTCTGGCCGGGGGTCAACTGGCTGTGGATGCTGTTATGAGGCTTAAGGG
CAGCACAAATTTAGAGTCCATCCAAATTATCAAGAAGCCTGGAGGATCAC
TGAAGGATTCCTTTCTAGATGAGGGATTCATTCTTGACAAGAAAATTGGC
ATTGGACAACCAAAACGTATAGAGAATGCAAAAATACTGGTGGCAAATAC
TGCAATGGATACAGATAAAGTGAAGATTTATGGGGCACGTGTTCGTGTTG
ATTCAATGTCAAAGGCCGCTGAGATAGAAGGTGCAGAGAAGCAAAAAATG
AGGGAAAAGGTGCAAAAGATAATAGCTCATGGGATTAACTGCTTCGTTAA
TAGGCAGTTGATTTACAATTTTCCAGAGGAACTCTTTGCAGATGCGGGTA
TACTTGCAATTGAGCATGCTGATTTTGATGGTATAGAGCGTCTGGCTTTA
GTAACTGGTGGTGAAATTGCATCAACCTTTGATAATCCAGAGTCAGTTAA
GCTTGGGCACTGCAAGCTTATTGAGGAAATTATGATTGGCGAGGACAAGT
TGATCCACTTTTCTGGTGTTGAAATGGGTCAGGCTTGTACCATAGTGTTG
AGAGGTGCAAGCCATCATGTGCTTGACGAGGCTGAGCGGTCTCTGCATGA
TGCCTTGTGTGTGCTGTCTCAGACAGTCAATGACAGCAGGGTTTTGTTTG
GAGGTGGATGGCCTGAGATGGTTATGG
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