FC930988

Overview
NameFC930988
Unique NameFC930988
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930988_ssr27 microsatellite FC930988_ssr27:27..40. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930988_ssr205 microsatellite FC930988_ssr205:205..216. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15248 contig Ccv1_Contig15248:1..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A_TOBAC (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.919e-80
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  241 VPSS-SHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            VPSS SHGNLDEQIAQLMQCKPLSEQEVR LCEKAKEILM+ESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR
Sbjct:    4 VPSSASHGNLDEQIAQLMQCKPLSEQEVRGLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 92

HSP 2 Score: 144.05 bits (362), Expect = 2.919e-80
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDYFPLTALVE
Sbjct:   94 YYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALVE 163
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A3_ARATH (Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.731e-78
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:  241 VPSSSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +P+ +  +LDEQI+QLMQCKPLSEQ+VR LCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR
Sbjct:    6 LPTDATLDLDEQISQLMQCKPLSEQQVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 93

HSP 2 Score: 145.591 bits (366), Expect = 7.731e-78
Identity = 69/70 (98.57%), Postives = 69/70 (98.57%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE
Sbjct:   95 YYSVETVTLLVGLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 164
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A4_ARATH (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Arabidopsis thaliana GN=PP2A4 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.806e-77
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 1 
Query:  241 VPSSSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +P+ +  +LDEQI+QLMQCKPLSEQ+VR LCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGG CPDTNYLFMGDYVDR
Sbjct:    6 IPTDATIDLDEQISQLMQCKPLSEQQVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGMCPDTNYLFMGDYVDR 93

HSP 2 Score: 144.821 bits (364), Expect = 3.806e-77
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LK+RYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE
Sbjct:   95 YYSVETVTLLVALKMRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 164
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A2_ORYSJ (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 8.445e-77
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:  247 SSSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            SS HG LD+QI +LMQCKPL E EVR LCEKAKEILM+ESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR
Sbjct:    2 SSPHGGLDDQIERLMQCKPLPEPEVRALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 87

HSP 2 Score: 144.05 bits (362), Expect = 8.445e-77
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDYFPLTALVE
Sbjct:   89 YYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALVE 158
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A2_ORYSI (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A2 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 8.445e-77
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 1 
Query:  247 SSSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            SS HG LD+QI +LMQCKPL E EVR LCEKAKEILM+ESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR
Sbjct:    2 SSPHGGLDDQIERLMQCKPLPEPEVRALCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 87

HSP 2 Score: 144.05 bits (362), Expect = 8.445e-77
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDYFPLTALVE
Sbjct:   89 YYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALVE 158
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A5_TOBAC (Serine/threonine-protein phosphatase PP2A-5 catalytic subunit OS=Nicotiana tabacum GN=NPP5 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.443e-76
Identity = 77/88 (87.50%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:  241 VPSSSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            V +S  GNLDEQI+QLMQCKPLSE +VR LCEKAKEIL +ESNVQPVKSPVTICGDIHGQFHDLAELFRIGG+CPDTNYLFMGDYVDR
Sbjct:    7 VAASIQGNLDEQISQLMQCKPLSEPDVRALCEKAKEILAEESNVQPVKSPVTICGDIHGQFHDLAELFRIGGQCPDTNYLFMGDYVDR 94

HSP 2 Score: 143.28 bits (360), Expect = 2.443e-76
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYPQR+TILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDYFPLTALVE
Sbjct:   96 YYSVETVTLLVALKVRYPQRLTILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDYFPLTALVE 165
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A_BRANA (Serine/threonine-protein phosphatase PP2A catalytic subunit (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 4.157e-76
Identity = 77/88 (87.50%), Postives = 83/88 (94.32%), Query Frame = 1 
Query:  241 VPSSSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +P+ +  +LDEQI+QLMQCKPLSEQ+VR LCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGG CPDTNYLFMGDYVDR
Sbjct:    2 IPTDATLDLDEQISQLMQCKPLSEQQVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGMCPDTNYLFMGDYVDR 89

HSP 2 Score: 141.354 bits (355), Expect = 4.157e-76
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWK FTDLFDY PLTALVE
Sbjct:   91 YYSVETVTLLVGLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVE 160
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A_MEDSA (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Medicago sativa GN=PP2A PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.668e-75
Identity = 75/81 (92.59%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:  262 NLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            +L+EQI+QLMQCKPLSEQ+V+ LCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR
Sbjct:   13 DLNEQISQLMQCKPLSEQQVKELCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 93

HSP 2 Score: 142.51 bits (358), Expect = 2.668e-75
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYG+ANVWKIFTDLFD+FPLTALVE
Sbjct:   95 YYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDFFPLTALVE 164
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A4_ORYSI (Putative serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Oryza sativa subsp. indica GN=PP2A4 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.713e-74
Identity = 73/85 (85.88%), Postives = 77/85 (90.59%), Query Frame = 1 
Query:  250 SSHGNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            S  G LD QI QLM+C+PLSE EV+ LCEKAKEILM+ESNVQPVKSPVTICGDIHGQFHDL ELFRIGGKCPDTNYLFMGDYVDR
Sbjct:   11 SGGGGLDAQIEQLMECRPLSETEVKTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDR 95

HSP 2 Score: 144.05 bits (362), Expect = 1.713e-74
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYG+ANVWKIFTDLFDYFPLTALVE
Sbjct:   97 YYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVE 166
[Close]
BLAST of FC930988 vs. ExPASy Swiss-Prot
Match: PP2A4_ORYSJ (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Oryza sativa subsp. japonica GN=PP2A4 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.914e-74
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:  259 GNLDEQIAQLMQCKPLSEQEVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDR 504
            G LD QI QLM+C+PLSE EV+ LCEKAKEILM+ESNVQPVKSPVTICGDIHGQFHDL ELFRIGGKCPDTNYLFMGDYVDR
Sbjct:   13 GGLDAQIEQLMECRPLSEPEVKTLCEKAKEILMEESNVQPVKSPVTICGDIHGQFHDLVELFRIGGKCPDTNYLFMGDYVDR 94

HSP 2 Score: 144.05 bits (362), Expect = 2.914e-74
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 3 
Query:  507 YYSVETVTLLVSLKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDYFPLTALVE 716
            YYSVETVTLLV+LKVRYPQRITILRGNHESRQITQVYGFYDECLRKYG+ANVWKIFTDLFDYFPLTALVE
Sbjct:   96 YYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDYFPLTALVE 165
The following BLAST results are available for this feature:
BLAST of FC930988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PP2A_TOBAC2.919e-8096.63Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A3_ARATH7.731e-7888.64Serine/threonine-protein phosphatase PP2A-3 cataly... [more]
PP2A4_ARATH3.806e-7787.50Serine/threonine-protein phosphatase PP2A-4 cataly... [more]
PP2A2_ORYSJ8.445e-7789.53Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A2_ORYSI8.445e-7789.53Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A5_TOBAC2.443e-7687.50Serine/threonine-protein phosphatase PP2A-5 cataly... [more]
PP2A_BRANA4.157e-7687.50Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A_MEDSA2.668e-7592.59Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A4_ORYSI1.713e-7485.88Putative serine/threonine-protein phosphatase PP2A... [more]
PP2A4_ORYSJ2.914e-7487.80Serine/threonine-protein phosphatase PP2A-4 cataly... [more]

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Properties
Property NameValue
Genbank descriptionC34100B11EF PostHarvP1 Citrus clementina cDNA clone C34100B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930988 ID=FC930988; Name=FC930988; organism=Citrus clementina; type=EST; length=717bp
GAAAATGTTTGTTATTTTAGCCCATTTCTCTCTCTCTCTCTAAACACTGA
AGCCTTCTCTCTTTTTTTTTTTAAAATTTTTTTTTGAGATACAAAATTGA
ATTTTGATTATAGGGTTTCGAAAAAAATTAGGGTTTGTTTGTTGAAATTT
AGGGTTAGGGTTAGATTAAAAAGAGGAAAGTGAAGGGATCTGAGTCTGCA
AATTAAGAAGAAGAAGGACAAGAAAATGAGCTTGGATTCGGTCCCTTCAA
GTTCACATGGAAATCTCGACGAGCAGATTGCTCAGCTTATGCAGTGCAAG
CCCTTATCGGAACAAGAGGTTAGAGTGTTATGCGAAAAGGCCAAGGAGAT
ATTGATGGATGAAAGTAATGTCCAGCCTGTAAAAAGTCCTGTTACAATTT
GTGGTGATATTCATGGACAATTTCATGATCTTGCAGAGCTTTTCCGCATT
GGAGGAAAGTGTCCAGATACAAACTACTTGTTCATGGGAGATTATGTTGA
CCGTGTTACTATTCAGTAGAAACTGTTACGCTTTTGGTATCTCTGAAAGT
GCGTTATCCTCAAAGGATTACTATTCTAAGGGGGAATCATGAAAGTCGTC
AGATTACTCAGGTCTATGGATTCTATGATGAGTGCCTTAGGAAGTACGGC
AATGCAAATGTTTGGAAGATATTCACAGATTTATTTGACTATTTTCCACT
GACAGCATTGGTTGAAT
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