FC930993

Overview
NameFC930993
Unique NameFC930993
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12635 contig Ccv1_Contig12635:1..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930993 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.080e-38
Identity = 96/192 (50.00%), Postives = 117/192 (60.94%), Query Frame = 3
Query:  132 IPRALRCTVAPSATSASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSV--RRYTSRIDLPEKLYRIDQIKAEMKNGVLKVTVPKVKEEERADV 689
            +PRALR  V P A S SR FNTNA   Y                                    TRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV+++LEQNTLVIR           S   RR+TSRI+LPEK+Y+ D+IKAEMKNGVLKV +PK+KE+ER ++
Sbjct:   20 VPRALRA-VRPVAAS-SRLFNTNAARNYEDGVDRNHHSNRHVSRHGGDFFSHILDPFTP-----TRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDERNNI 204          
BLAST of FC930993 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.122e-37
Identity = 92/178 (51.69%), Postives = 109/178 (61.24%), Query Frame = 3
Query:  162 PSATSASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXX--SVRRYTSRIDLPEKLYRIDQIKAEMKNGVLKVTVPKVKEEERADV 689
            P A+SASR FNTNA+ QY                                     RSLSQVLN +D +T+NP  S      RRGWDA+ET+DAL L +DMPGLGKEDV++S+EQNTL I+             S RR++SRIDLPEKLY+ID IKAEMKNGVLKVTVPK+KEEER +V
Sbjct:   23 PVASSASRSFNTNAMRQYDQHSDDRNVDVYRHSFPRTRRDDLLLSDVFDPFSPP-RSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNV 196          
BLAST of FC930993 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.738e-37
Identity = 94/200 (47.00%), Postives = 113/200 (56.50%), Query Frame = 3
Query:  132 IPRALRCTVAPSATS------ASRFFNTNAVHQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSV----RRYTSRIDLPEKLYRIDQIKAEMKNGVLKVTVPKVKEEERADV 689
            + R L  ++AP + S      +SR FNTNAV  Y                                    TRS+SQVLN MDQ  ENP  S TRG    G RRGWD KE DDAL L IDMPGL +EDV+++LEQ+TLVIR                 RR+TSRI LP+K+Y+ID+IKAEMKNGVLKV +PK+KE+ER DV
Sbjct:    7 LKRLLSSSIAPRSRSVLRPAVSSRLFNTNAVRSYDDDGENGDGVDLYRRSVPRRRGDFFSDVFDPFSP--TRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQERNDV 204          
BLAST of FC930993 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.262e-35
Identity = 73/126 (57.94%), Postives = 93/126 (73.81%), Query Frame = 3
Query:  324 TRSLSQVLNFMDQMTENPFFSGTRGG---LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRIDQIKAEMKNGVLKVTVPKVKEEERADVF 692
            TRS+ Q++N MDQ+ ENPF + +RG    +RRGWD +E ++AL L +DMPGL KEDV+VS+E NTL+I+             RRY+SRI+L   LY+ID IKAEMKNGVLKVTVPK+KEEE+ DVF
Sbjct:   74 TRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVF 199          
BLAST of FC930993 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.293e-35
Identity = 65/94 (69.15%), Postives = 78/94 (82.98%), Query Frame = 3
Query:  408 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRRYTSRIDLPEKLYRIDQIKAEMKNGVLKVTVPKVKEEERADV 689
            RGWDA+ET+DAL+L +DMPGL KEDV++S+EQNTL+I+           S RRYTSRIDLP+KLY+IDQI+AEMKNGVLKV VPK+KEEER DV
Sbjct:  112 RGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDV 205          

HSP 2 Score: 27.335 bits (59), Expect = 3.293e-35
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 2
Query:  302 CV*SIFTNKEPEPGPELHGSDDGES 376
            CV SIF++ E EPG E  G   G+S
Sbjct:   72 CVGSIFSDSEFEPGSEHDGPGHGQS 96          

HSP 3 Score: 25.7942 bits (55), Expect = 3.293e-35
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  147 RCTVAPSATSASRFFNTNAVHQY 215
            R  + P+A+++ R F+TNA+ QY
Sbjct:   18 RSLLRPAASASHRSFDTNAMRQY 40          
BLAST of FC930993 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.071e-26
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 3
Query:  327 RSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVR--RYTSRIDLPEKLYRIDQIKAEMKNGVLKVTVPKVKEEERADVF 692
            +SL ++L+ MD +   P        LRRGW+AKE+++AL+L +DMPGLGKE V+V  EQN+LVI+                RY+ RI+L  ++YR+DQIKAEMKNGVLKV VPKVKEE+R DVF
Sbjct:   93 QSLGRLLSLMDDLA-TPAGRAGAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQRRDVF 215          
BLAST of FC930993 vs. ExPASy Swiss-Prot
Match: HS26M_ORYSJ (26.2 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP26.2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 64/130 (49.23%), Postives = 79/130 (60.77%), Query Frame = 3
Query:  330 SLSQVLNFM-DQMTENPFFSGTRG----GLRRG--WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVR--RYTSRIDLPEKLYRIDQIKAEMKNGVLKVTVPKVKEEERADVF 692
            SL ++L  M D         GT G      RRG  W AKE DDA++L + MPGLGKE V+V  EQN+LVI+                RYT RI+LP   +++D+IKAEMKNGVL+V VPK+KEEER DVF
Sbjct:  114 SLGRLLALMEDAAVATAAAPGTNGLATAAARRGGWWVAKEDDDAVHLKVSMPGLGKEHVKVWAEQNSLVIKGEGEKDPEDDADAAPPRYTRRIELPADAFKMDKIKAEMKNGVLRVAVPKLKEEERKDVF 243          
BLAST of FC930993 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  327 RSLSQVLNFMDQMTEN--PFFSGTRGG-----LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRIDQIKAEMKNGVLKVTVPKVKEEER 680
            R++ Q+L+ MD+M E+  P     RGG     +R  WD KE +  + +  DMPGL KEDV++S+E N LVI    +           SV  Y +R+ LP+   + D+IKAE+KNGVL +T+PK K E +
Sbjct:   93 RTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEK-DKIKAELKNGVLFITIPKTKVERK 220          
BLAST of FC930993 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 50/129 (38.76%), Postives = 75/129 (58.14%), Query Frame = 3
Query:  327 RSLSQVLNFMDQMTENPF-FSGTR---GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXXSVRRYTS---RIDLPEKLYRIDQIKAEMKNGVLKVTVPKVKEEER 680
            RS+ Q+L+ MD++ E+   F G     G +R  WD K+ +  + +  DMPGL KEDV+VS+E + LVI    +           S R Y+S   R+ LP+   + D++KAE+KNGVL +T+PK K E +
Sbjct:   47 RSMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEK-DKVKAELKNGVLYITIPKTKVERK 174          
BLAST of FC930993 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.228e-14
Identity = 44/128 (34.38%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  327 RSLSQVLNFMDQMTENPF-FSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI-----RXXXXXXXXXXXSVRRYTSRIDLPEKLYRIDQIKAEMKNGVLKVTVPKVKEEER 680
            R++ Q+++ MD++ E+   F G+R    G +R  WD K+ ++ + +  DMPGL KE+V+VS+E + LVI     +           +   Y +R+ LP+ + + D++KAE+KNGVL +++PK K E++
Sbjct:  108 RTMRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDK-DKVKAELKNGVLLISIPKTKVEKK 234          
The following BLAST results are available for this feature:
BLAST of FC930993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS235_ARATH2.080e-3850.0023.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA5.122e-3751.69Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS23M_ARATH8.738e-3747.0023.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU1.262e-3557.94Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS22M_SOYBN3.293e-3569.15Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS24M_ORYSJ1.071e-2652.4224.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS26M_ORYSJ4.655e-2249.2326.2 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS25P_ARATH4.508e-1740.3125.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_SOYBN7.198e-1538.76Small heat shock protein, chloroplastic (Fragment)... [more]
HS22C_PETHY1.228e-1434.38Small heat shock protein, chloroplastic OS=Petunia... [more]

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Properties
Property NameValue
Genbank descriptionC34100C04EF PostHarvP1 Citrus clementina cDNA clone C34100C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930993 ID=FC930993; Name=FC930993; organism=Citrus clementina; type=EST; length=692bp
GGTCTTCAGCAAGAAATCAGCCGCACTCACAAAAAGTATTTTGAAATCTC
TGCATTGTTTCGTGCTTTCTTTAAGAATTCGGCTCAATGGCGTCCTCTCT
TGCTCTCAAGAGGCTTGCTTCCTCTAATGTCATACCCAGGGCTTTACGCT
GCACCGTCGCTCCTTCTGCTACTTCAGCATCTCGGTTCTTCAACACAAAC
GCTGTTCATCAATACGATGACGGCGGAGACGACCGTGATCTCGACATTGA
TCGCCGTTCCGCTCGCTCTTTCCCTCGCCGTCGTGACGACTTCTTCTCAG
ATGTGTTTGATCCATTTTCACCAACAAGGAGCCTGAGCCAGGTCCTGAAC
TTCATGGATCAGATGACGGAGAATCCTTTCTTCAGCGGCACACGTGGTGG
ACTGCGCAGAGGCTGGGATGCTAAAGAAACCGATGATGCGTTGAACCTCA
GCATCGACATGCCAGGGCTGGGCAAGGAAGACGTGAGAGTCTCTCTGGAG
CAGAACACGCTGGTGATCAGAGGCGAGGGCGGAAAAGAAGGAGAGGACGA
AGAGAGCGTGCGTAGGTACACCAGCAGGATTGATTTGCCAGAGAAGCTCT
ACAGGATTGATCAGATCAAGGCTGAGATGAAGAATGGTGTGCTGAAAGTG
ACGGTGCCCAAGGTGAAGGAAGAGGAGAGGGCTGATGTGTTC
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