FC931001

Overview
NameFC931001
Unique NameFC931001
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length475
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931001_ssr50 microsatellite FC931001_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15252 contig Ccv1_Contig15252:1..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC931001 vs. ExPASy Swiss-Prot
Match: FB135_ARATH (F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.347e-12
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:  211 QKVNKRSKLEDDHQQAT---GMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQL 474
            +K  K+ K+ DD        G+E+LP +I+  I  RLPI+S+ +  FVCR+WR+     +L      +S+S +   PCL+LHCD PIRN L
Sbjct:    4 EKSFKKRKITDDVDGVGVGGGLESLPEDIIADIFSRLPISSIARLMFVCRSWRS-----VLTQHGRLSSSSSSPTKPCLLLHCDSPIRNGL 89
The following BLAST results are available for this feature:
BLAST of FC931001 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB135_ARATH4.347e-1240.66F-box protein At3g07870 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionC34100D01EF PostHarvP1 Citrus clementina cDNA clone C34100D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931001 ID=FC931001; Name=FC931001; organism=Citrus clementina; type=EST; length=475bp
TTAGCCAAGAATTCTTCTTGTTCTTTTCGTCTNTCTCCTCTTTTTTTATT
TATTATTATTATAATTTTATTTTGATCTCATCAAAGTCTACATGTTTATC
TTCAACCCCTTTTAATTTTTCATCACCTAACCCCTTTGCTTTTAACTCAA
TTTATTCATTTAACGAGCTACCAAAGCTACCAGGCCCAAGCCATGGAGTT
GGATGTTAAGCAAAAGGTGAACAAAAGAAGCAAGCTTGAAGATGATCATC
AACAAGCAACCGGGATGGAAACTCTACCTCGAGAGATCGTGCTCCATATA
TTGCTGAGGCTCCCGATCACATCTTTGGTACAGTTCAAGTTTGTGTGCAG
AGCTTGGAGAGCCTTGGCGCAAGACCCTCTTCTTGCTAATCTGCATAATA
CTACAAGTACAAGCAAAGCTGAAAAGAATCCGTGCCTCATCCTTCACTGT
GACTTTCCCATCAGAAACCAGCTCT
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